Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
DEPDC4Q8N2C3 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC24.56■■□□□ 1.52
DEPDC4Q8N2C3 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC24.56■■□□□ 1.52
DEPDC4Q8N2C3 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
DEPDC4Q8N2C3 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
DEPDC4Q8N2C3 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC24.54■■□□□ 1.52
DEPDC4Q8N2C3 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC24.52■■□□□ 1.52
DEPDC4Q8N2C3 RARRES2P7-201ENST00000567349 469 ntBASIC24.51■■□□□ 1.51
DEPDC4Q8N2C3 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC24.51■■□□□ 1.51
DEPDC4Q8N2C3 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
DEPDC4Q8N2C3 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
DEPDC4Q8N2C3 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
DEPDC4Q8N2C3 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC24.49■■□□□ 1.51
DEPDC4Q8N2C3 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC24.49■■□□□ 1.51
DEPDC4Q8N2C3 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
DEPDC4Q8N2C3 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC24.46■■□□□ 1.51
DEPDC4Q8N2C3 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
DEPDC4Q8N2C3 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC24.46■■□□□ 1.51
DEPDC4Q8N2C3 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
DEPDC4Q8N2C3 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC24.45■■□□□ 1.5
DEPDC4Q8N2C3 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
DEPDC4Q8N2C3 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
DEPDC4Q8N2C3 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC24.44■■□□□ 1.5
DEPDC4Q8N2C3 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
DEPDC4Q8N2C3 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
DEPDC4Q8N2C3 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
DEPDC4Q8N2C3 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC24.43■■□□□ 1.5
DEPDC4Q8N2C3 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC24.42■■□□□ 1.5
DEPDC4Q8N2C3 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
DEPDC4Q8N2C3 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC24.42■■□□□ 1.5
DEPDC4Q8N2C3 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC24.41■■□□□ 1.5
DEPDC4Q8N2C3 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC24.41■■□□□ 1.5
DEPDC4Q8N2C3 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
DEPDC4Q8N2C3 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
DEPDC4Q8N2C3 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC24.4■■□□□ 1.5
DEPDC4Q8N2C3 KLF16-203ENST00000592313 508 ntTSL 3 BASIC24.4■■□□□ 1.5
DEPDC4Q8N2C3 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC24.4■■□□□ 1.5
DEPDC4Q8N2C3 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
DEPDC4Q8N2C3 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
DEPDC4Q8N2C3 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC24.38■■□□□ 1.49
DEPDC4Q8N2C3 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC24.38■■□□□ 1.49
DEPDC4Q8N2C3 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC24.37■■□□□ 1.49
DEPDC4Q8N2C3 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
DEPDC4Q8N2C3 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
DEPDC4Q8N2C3 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC24.37■■□□□ 1.49
DEPDC4Q8N2C3 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
DEPDC4Q8N2C3 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
DEPDC4Q8N2C3 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
DEPDC4Q8N2C3 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
DEPDC4Q8N2C3 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
DEPDC4Q8N2C3 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
DEPDC4Q8N2C3 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC24.34■■□□□ 1.49
DEPDC4Q8N2C3 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
DEPDC4Q8N2C3 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
DEPDC4Q8N2C3 AC142086.6-201ENST00000621154 1765 ntBASIC24.34■■□□□ 1.49
DEPDC4Q8N2C3 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC24.33■■□□□ 1.49
DEPDC4Q8N2C3 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
DEPDC4Q8N2C3 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
DEPDC4Q8N2C3 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
DEPDC4Q8N2C3 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
DEPDC4Q8N2C3 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC24.31■■□□□ 1.48
DEPDC4Q8N2C3 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC24.31■■□□□ 1.48
DEPDC4Q8N2C3 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
DEPDC4Q8N2C3 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC24.31■■□□□ 1.48
DEPDC4Q8N2C3 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
DEPDC4Q8N2C3 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
DEPDC4Q8N2C3 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
DEPDC4Q8N2C3 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC24.29■■□□□ 1.48
DEPDC4Q8N2C3 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
DEPDC4Q8N2C3 SETD8P1-201ENST00000623146 1180 ntBASIC24.28■■□□□ 1.48
DEPDC4Q8N2C3 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
DEPDC4Q8N2C3 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
DEPDC4Q8N2C3 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
DEPDC4Q8N2C3 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC24.27■■□□□ 1.48
DEPDC4Q8N2C3 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
DEPDC4Q8N2C3 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
DEPDC4Q8N2C3 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
DEPDC4Q8N2C3 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC24.25■■□□□ 1.47
DEPDC4Q8N2C3 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
DEPDC4Q8N2C3 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
DEPDC4Q8N2C3 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
DEPDC4Q8N2C3 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
DEPDC4Q8N2C3 AL135925.1-201ENST00000605920 1701 ntBASIC24.24■■□□□ 1.47
DEPDC4Q8N2C3 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC24.24■■□□□ 1.47
DEPDC4Q8N2C3 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
DEPDC4Q8N2C3 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
DEPDC4Q8N2C3 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
DEPDC4Q8N2C3 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC24.23■■□□□ 1.47
DEPDC4Q8N2C3 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
DEPDC4Q8N2C3 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC24.23■■□□□ 1.47
DEPDC4Q8N2C3 AC097358.2-201ENST00000607541 1159 ntBASIC24.23■■□□□ 1.47
DEPDC4Q8N2C3 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
DEPDC4Q8N2C3 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC24.23■■□□□ 1.47
DEPDC4Q8N2C3 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
DEPDC4Q8N2C3 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
DEPDC4Q8N2C3 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC24.23■■□□□ 1.47
DEPDC4Q8N2C3 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC24.22■■□□□ 1.47
DEPDC4Q8N2C3 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
DEPDC4Q8N2C3 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
DEPDC4Q8N2C3 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC24.21■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms