Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC28.75■■■□□ 2.19
SCN1AP35498 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC28.74■■■□□ 2.19
SCN1AP35498 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
SCN1AP35498 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
SCN1AP35498 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC28.72■■■□□ 2.19
SCN1AP35498 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
SCN1AP35498 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC28.72■■■□□ 2.19
SCN1AP35498 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC28.71■■■□□ 2.19
SCN1AP35498 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC28.71■■■□□ 2.19
SCN1AP35498 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC28.7■■■□□ 2.19
SCN1AP35498 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC28.7■■■□□ 2.19
SCN1AP35498 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
SCN1AP35498 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
SCN1AP35498 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC28.69■■■□□ 2.18
SCN1AP35498 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
SCN1AP35498 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC28.69■■■□□ 2.18
SCN1AP35498 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
SCN1AP35498 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC28.68■■■□□ 2.18
SCN1AP35498 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
SCN1AP35498 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
SCN1AP35498 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC28.66■■■□□ 2.18
SCN1AP35498 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC28.65■■■□□ 2.18
SCN1AP35498 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
SCN1AP35498 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC28.64■■■□□ 2.17
SCN1AP35498 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC28.64■■■□□ 2.17
SCN1AP35498 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC28.63■■■□□ 2.17
SCN1AP35498 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
SCN1AP35498 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SCN1AP35498 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SCN1AP35498 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC28.62■■■□□ 2.17
SCN1AP35498 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
SCN1AP35498 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SCN1AP35498 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC28.61■■■□□ 2.17
SCN1AP35498 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC28.61■■■□□ 2.17
SCN1AP35498 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC28.61■■■□□ 2.17
SCN1AP35498 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC28.6■■■□□ 2.17
SCN1AP35498 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
SCN1AP35498 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SCN1AP35498 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SCN1AP35498 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SCN1AP35498 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
SCN1AP35498 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC28.59■■■□□ 2.17
SCN1AP35498 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
SCN1AP35498 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
SCN1AP35498 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
SCN1AP35498 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC28.59■■■□□ 2.17
SCN1AP35498 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
SCN1AP35498 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
SCN1AP35498 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC28.58■■■□□ 2.17
SCN1AP35498 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
SCN1AP35498 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC28.57■■■□□ 2.16
SCN1AP35498 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC28.57■■■□□ 2.16
SCN1AP35498 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
SCN1AP35498 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC28.54■■■□□ 2.16
SCN1AP35498 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
SCN1AP35498 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
SCN1AP35498 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC28.51■■■□□ 2.15
SCN1AP35498 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC28.51■■■□□ 2.15
SCN1AP35498 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
SCN1AP35498 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
SCN1AP35498 BOD1-206ENST00000480951 814 ntTSL 2 BASIC28.5■■■□□ 2.15
SCN1AP35498 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
SCN1AP35498 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
SCN1AP35498 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC28.48■■■□□ 2.15
SCN1AP35498 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC28.48■■■□□ 2.15
SCN1AP35498 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
SCN1AP35498 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC28.47■■■□□ 2.15
SCN1AP35498 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC28.47■■■□□ 2.15
SCN1AP35498 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
SCN1AP35498 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC28.46■■■□□ 2.15
SCN1AP35498 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC28.46■■■□□ 2.15
SCN1AP35498 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
SCN1AP35498 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
SCN1AP35498 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC28.44■■■□□ 2.14
SCN1AP35498 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
SCN1AP35498 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC28.43■■■□□ 2.14
SCN1AP35498 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC28.43■■■□□ 2.14
SCN1AP35498 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC28.43■■■□□ 2.14
SCN1AP35498 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC28.42■■■□□ 2.14
SCN1AP35498 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC28.42■■■□□ 2.14
SCN1AP35498 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC28.42■■■□□ 2.14
SCN1AP35498 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC28.42■■■□□ 2.14
SCN1AP35498 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
SCN1AP35498 MLEC-202ENST00000412616 841 ntTSL 3 BASIC28.42■■■□□ 2.14
SCN1AP35498 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
SCN1AP35498 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC28.41■■■□□ 2.14
SCN1AP35498 AC108673.1-201ENST00000510422 1159 ntBASIC28.4■■■□□ 2.14
SCN1AP35498 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
SCN1AP35498 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
SCN1AP35498 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC28.39■■■□□ 2.14
SCN1AP35498 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
SCN1AP35498 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC28.39■■■□□ 2.13
SCN1AP35498 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC28.38■■■□□ 2.13
SCN1AP35498 MIR6090-201ENST00000622481 60 ntBASIC28.37■■■□□ 2.13
SCN1AP35498 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
SCN1AP35498 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC28.36■■■□□ 2.13
SCN1AP35498 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
SCN1AP35498 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC28.36■■■□□ 2.13
SCN1AP35498 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
SCN1AP35498 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC28.35■■■□□ 2.13
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms