Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
SMCHD1A6NHR9 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
SMCHD1A6NHR9 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
SMCHD1A6NHR9 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
SMCHD1A6NHR9 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
SMCHD1A6NHR9 HGH1-207ENST00000628266 258 ntTSL 5 BASIC30.93■■■□□ 2.54
SMCHD1A6NHR9 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
SMCHD1A6NHR9 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
SMCHD1A6NHR9 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC30.92■■■□□ 2.54
SMCHD1A6NHR9 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC30.9■■■□□ 2.54
SMCHD1A6NHR9 MBP-237ENST00000579129 1052 ntTSL 5 BASIC30.9■■■□□ 2.54
SMCHD1A6NHR9 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
SMCHD1A6NHR9 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC30.9■■■□□ 2.54
SMCHD1A6NHR9 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
SMCHD1A6NHR9 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC30.89■■■□□ 2.54
SMCHD1A6NHR9 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
SMCHD1A6NHR9 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
SMCHD1A6NHR9 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.53
SMCHD1A6NHR9 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC30.88■■■□□ 2.53
SMCHD1A6NHR9 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC30.88■■■□□ 2.53
SMCHD1A6NHR9 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
SMCHD1A6NHR9 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC30.87■■■□□ 2.53
SMCHD1A6NHR9 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
SMCHD1A6NHR9 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
SMCHD1A6NHR9 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC30.85■■■□□ 2.53
SMCHD1A6NHR9 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC30.84■■■□□ 2.53
SMCHD1A6NHR9 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
SMCHD1A6NHR9 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
SMCHD1A6NHR9 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
SMCHD1A6NHR9 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC30.81■■■□□ 2.52
SMCHD1A6NHR9 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC30.81■■■□□ 2.52
SMCHD1A6NHR9 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC30.8■■■□□ 2.52
SMCHD1A6NHR9 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC30.8■■■□□ 2.52
SMCHD1A6NHR9 RPS2-202ENST00000526522 924 ntTSL 2 BASIC30.79■■■□□ 2.52
SMCHD1A6NHR9 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC30.79■■■□□ 2.52
SMCHD1A6NHR9 ZNRF2P2-203ENST00000454624 420 ntBASIC30.78■■■□□ 2.52
SMCHD1A6NHR9 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
SMCHD1A6NHR9 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
SMCHD1A6NHR9 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
SMCHD1A6NHR9 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC30.76■■■□□ 2.52
SMCHD1A6NHR9 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC30.75■■■□□ 2.51
SMCHD1A6NHR9 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
SMCHD1A6NHR9 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
SMCHD1A6NHR9 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC30.74■■■□□ 2.51
SMCHD1A6NHR9 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
SMCHD1A6NHR9 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC30.72■■■□□ 2.51
SMCHD1A6NHR9 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC30.72■■■□□ 2.51
SMCHD1A6NHR9 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
SMCHD1A6NHR9 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC30.71■■■□□ 2.51
SMCHD1A6NHR9 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
SMCHD1A6NHR9 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
SMCHD1A6NHR9 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC30.69■■■□□ 2.5
SMCHD1A6NHR9 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
SMCHD1A6NHR9 AL161658.1-201ENST00000623641 1967 ntBASIC30.69■■■□□ 2.5
SMCHD1A6NHR9 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC30.69■■■□□ 2.5
SMCHD1A6NHR9 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
SMCHD1A6NHR9 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
SMCHD1A6NHR9 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
SMCHD1A6NHR9 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
SMCHD1A6NHR9 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC30.66■■■□□ 2.5
SMCHD1A6NHR9 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
SMCHD1A6NHR9 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
SMCHD1A6NHR9 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC30.66■■■□□ 2.5
SMCHD1A6NHR9 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC30.65■■■□□ 2.5
SMCHD1A6NHR9 MIR6090-201ENST00000622481 60 ntBASIC30.64■■■□□ 2.5
SMCHD1A6NHR9 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
SMCHD1A6NHR9 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC30.63■■■□□ 2.49
SMCHD1A6NHR9 AC108673.1-201ENST00000510422 1159 ntBASIC30.61■■■□□ 2.49
SMCHD1A6NHR9 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC30.61■■■□□ 2.49
SMCHD1A6NHR9 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC30.61■■■□□ 2.49
SMCHD1A6NHR9 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
SMCHD1A6NHR9 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC30.6■■■□□ 2.49
SMCHD1A6NHR9 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC30.6■■■□□ 2.49
SMCHD1A6NHR9 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
SMCHD1A6NHR9 DUX4L29-201ENST00000425409 679 ntBASIC30.59■■■□□ 2.49
SMCHD1A6NHR9 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
SMCHD1A6NHR9 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
SMCHD1A6NHR9 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC30.59■■■□□ 2.49
SMCHD1A6NHR9 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
SMCHD1A6NHR9 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
SMCHD1A6NHR9 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
SMCHD1A6NHR9 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
SMCHD1A6NHR9 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC30.58■■■□□ 2.49
SMCHD1A6NHR9 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC30.58■■■□□ 2.49
SMCHD1A6NHR9 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
SMCHD1A6NHR9 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
SMCHD1A6NHR9 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC30.58■■■□□ 2.49
SMCHD1A6NHR9 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.49
SMCHD1A6NHR9 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC30.57■■■□□ 2.49
SMCHD1A6NHR9 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC30.57■■■□□ 2.48
SMCHD1A6NHR9 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC30.56■■■□□ 2.48
SMCHD1A6NHR9 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
SMCHD1A6NHR9 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC30.53■■■□□ 2.48
SMCHD1A6NHR9 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC30.52■■■□□ 2.48
SMCHD1A6NHR9 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC30.52■■■□□ 2.48
SMCHD1A6NHR9 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
SMCHD1A6NHR9 MIR4449-201ENST00000578365 66 ntBASIC30.52■■■□□ 2.48
SMCHD1A6NHR9 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC30.52■■■□□ 2.48
SMCHD1A6NHR9 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC30.51■■■□□ 2.47
SMCHD1A6NHR9 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms