Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CLRN3Q8NCR9 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
CLRN3Q8NCR9 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
CLRN3Q8NCR9 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC16.77■□□□□ 0.28
CLRN3Q8NCR9 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CLRN3Q8NCR9 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLRN3Q8NCR9 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC16.77■□□□□ 0.28
CLRN3Q8NCR9 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC16.77■□□□□ 0.28
CLRN3Q8NCR9 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLRN3Q8NCR9 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLRN3Q8NCR9 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
CLRN3Q8NCR9 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CLRN3Q8NCR9 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.77■□□□□ 0.27
CLRN3Q8NCR9 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC16.77■□□□□ 0.27
CLRN3Q8NCR9 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CLRN3Q8NCR9 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC16.77■□□□□ 0.27
CLRN3Q8NCR9 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC16.77■□□□□ 0.27
CLRN3Q8NCR9 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CLRN3Q8NCR9 AC138932.1-201ENST00000534164 6830 ntBASIC16.77■□□□□ 0.27
CLRN3Q8NCR9 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CLRN3Q8NCR9 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
CLRN3Q8NCR9 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
CLRN3Q8NCR9 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC16.77■□□□□ 0.27
CLRN3Q8NCR9 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CLRN3Q8NCR9 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
CLRN3Q8NCR9 AC090877.2-201ENST00000558441 1738 ntBASIC16.76■□□□□ 0.27
CLRN3Q8NCR9 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
CLRN3Q8NCR9 OXCT2P1-201ENST00000447263 1535 ntBASIC16.76■□□□□ 0.27
CLRN3Q8NCR9 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC16.76■□□□□ 0.27
CLRN3Q8NCR9 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLRN3Q8NCR9 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
CLRN3Q8NCR9 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLRN3Q8NCR9 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLRN3Q8NCR9 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLRN3Q8NCR9 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLRN3Q8NCR9 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLRN3Q8NCR9 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
CLRN3Q8NCR9 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
CLRN3Q8NCR9 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC16.76■□□□□ 0.27
CLRN3Q8NCR9 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLRN3Q8NCR9 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLRN3Q8NCR9 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CLRN3Q8NCR9 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.76■□□□□ 0.27
CLRN3Q8NCR9 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLRN3Q8NCR9 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CLRN3Q8NCR9 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CLRN3Q8NCR9 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 AGPS-202ENST00000409888 815 ntTSL 4 BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CLRN3Q8NCR9 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLRN3Q8NCR9 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLRN3Q8NCR9 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CLRN3Q8NCR9 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC16.74■□□□□ 0.27
CLRN3Q8NCR9 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
CLRN3Q8NCR9 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLRN3Q8NCR9 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLRN3Q8NCR9 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.74■□□□□ 0.27
CLRN3Q8NCR9 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
CLRN3Q8NCR9 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC16.74■□□□□ 0.27
CLRN3Q8NCR9 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLRN3Q8NCR9 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLRN3Q8NCR9 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC16.74■□□□□ 0.27
CLRN3Q8NCR9 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLRN3Q8NCR9 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLRN3Q8NCR9 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLRN3Q8NCR9 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLRN3Q8NCR9 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.73■□□□□ 0.27
CLRN3Q8NCR9 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC16.73■□□□□ 0.27
CLRN3Q8NCR9 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC16.73■□□□□ 0.27
CLRN3Q8NCR9 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLRN3Q8NCR9 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC16.73■□□□□ 0.27
CLRN3Q8NCR9 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
CLRN3Q8NCR9 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLRN3Q8NCR9 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC16.73■□□□□ 0.27
CLRN3Q8NCR9 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
CLRN3Q8NCR9 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLRN3Q8NCR9 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC16.73■□□□□ 0.27
CLRN3Q8NCR9 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms