Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
HDDC3Q8N4P3 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HDDC3Q8N4P3 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HDDC3Q8N4P3 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HDDC3Q8N4P3 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.13■□□□□ 0.97
HDDC3Q8N4P3 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HDDC3Q8N4P3 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HDDC3Q8N4P3 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HDDC3Q8N4P3 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC21.13■□□□□ 0.97
HDDC3Q8N4P3 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
HDDC3Q8N4P3 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC21.13■□□□□ 0.97
HDDC3Q8N4P3 AC008694.1-202ENST00000636953 945 ntBASIC21.13■□□□□ 0.97
HDDC3Q8N4P3 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HDDC3Q8N4P3 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.13■□□□□ 0.97
HDDC3Q8N4P3 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.13■□□□□ 0.97
HDDC3Q8N4P3 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
HDDC3Q8N4P3 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
HDDC3Q8N4P3 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HDDC3Q8N4P3 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
HDDC3Q8N4P3 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.12■□□□□ 0.97
HDDC3Q8N4P3 AC098934.4-201ENST00000564127 592 ntBASIC21.12■□□□□ 0.97
HDDC3Q8N4P3 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC21.12■□□□□ 0.97
HDDC3Q8N4P3 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HDDC3Q8N4P3 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HDDC3Q8N4P3 FGF8-207ENST00000618991 856 ntTSL 3 BASIC21.12■□□□□ 0.97
HDDC3Q8N4P3 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC21.12■□□□□ 0.97
HDDC3Q8N4P3 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HDDC3Q8N4P3 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.12■□□□□ 0.97
HDDC3Q8N4P3 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.12■□□□□ 0.97
HDDC3Q8N4P3 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HDDC3Q8N4P3 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HDDC3Q8N4P3 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC21.12■□□□□ 0.97
HDDC3Q8N4P3 RBM17P2-201ENST00000616397 1405 ntBASIC21.12■□□□□ 0.97
HDDC3Q8N4P3 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.11■□□□□ 0.97
HDDC3Q8N4P3 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HDDC3Q8N4P3 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HDDC3Q8N4P3 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.11■□□□□ 0.97
HDDC3Q8N4P3 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.11■□□□□ 0.97
HDDC3Q8N4P3 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HDDC3Q8N4P3 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HDDC3Q8N4P3 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HDDC3Q8N4P3 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HDDC3Q8N4P3 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
HDDC3Q8N4P3 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC21.11■□□□□ 0.97
HDDC3Q8N4P3 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HDDC3Q8N4P3 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
HDDC3Q8N4P3 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
HDDC3Q8N4P3 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.11■□□□□ 0.97
HDDC3Q8N4P3 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
HDDC3Q8N4P3 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
HDDC3Q8N4P3 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HDDC3Q8N4P3 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HDDC3Q8N4P3 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
HDDC3Q8N4P3 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HDDC3Q8N4P3 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
HDDC3Q8N4P3 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC21.1■□□□□ 0.97
HDDC3Q8N4P3 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HDDC3Q8N4P3 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC21.1■□□□□ 0.97
HDDC3Q8N4P3 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HDDC3Q8N4P3 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.1■□□□□ 0.97
HDDC3Q8N4P3 AC010542.4-201ENST00000563151 1910 ntBASIC21.1■□□□□ 0.97
HDDC3Q8N4P3 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
HDDC3Q8N4P3 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HDDC3Q8N4P3 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC21.1■□□□□ 0.97
HDDC3Q8N4P3 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
HDDC3Q8N4P3 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC21.1■□□□□ 0.97
HDDC3Q8N4P3 AC069236.1-201ENST00000604339 616 ntBASIC21.1■□□□□ 0.97
HDDC3Q8N4P3 OR10C1-204ENST00000622521 1039 ntBASIC21.1■□□□□ 0.97
HDDC3Q8N4P3 FAM99A-202ENST00000538190 1989 ntBASIC21.1■□□□□ 0.97
HDDC3Q8N4P3 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.1■□□□□ 0.97
HDDC3Q8N4P3 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HDDC3Q8N4P3 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HDDC3Q8N4P3 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HDDC3Q8N4P3 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HDDC3Q8N4P3 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HDDC3Q8N4P3 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HDDC3Q8N4P3 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC21.09■□□□□ 0.97
HDDC3Q8N4P3 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HDDC3Q8N4P3 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC21.09■□□□□ 0.97
HDDC3Q8N4P3 AC016405.3-201ENST00000607710 860 ntBASIC21.09■□□□□ 0.97
HDDC3Q8N4P3 AP006294.2-201ENST00000641667 209 ntBASIC21.09■□□□□ 0.97
HDDC3Q8N4P3 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HDDC3Q8N4P3 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.09■□□□□ 0.97
HDDC3Q8N4P3 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.09■□□□□ 0.97
HDDC3Q8N4P3 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HDDC3Q8N4P3 MKRN4P-201ENST00000444706 1521 ntBASIC21.09■□□□□ 0.97
HDDC3Q8N4P3 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.09■□□□□ 0.97
HDDC3Q8N4P3 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HDDC3Q8N4P3 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.08■□□□□ 0.97
HDDC3Q8N4P3 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
HDDC3Q8N4P3 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
HDDC3Q8N4P3 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HDDC3Q8N4P3 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
HDDC3Q8N4P3 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HDDC3Q8N4P3 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HDDC3Q8N4P3 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
HDDC3Q8N4P3 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
HDDC3Q8N4P3 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HDDC3Q8N4P3 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HDDC3Q8N4P3 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms