Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
DEPDC4Q8N2C3 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
DEPDC4Q8N2C3 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
DEPDC4Q8N2C3 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
DEPDC4Q8N2C3 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.45■□□□□ 0.7
DEPDC4Q8N2C3 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
DEPDC4Q8N2C3 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
DEPDC4Q8N2C3 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
DEPDC4Q8N2C3 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.45■□□□□ 0.7
DEPDC4Q8N2C3 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
DEPDC4Q8N2C3 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
DEPDC4Q8N2C3 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
DEPDC4Q8N2C3 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
DEPDC4Q8N2C3 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC19.45■□□□□ 0.7
DEPDC4Q8N2C3 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
DEPDC4Q8N2C3 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.45■□□□□ 0.7
DEPDC4Q8N2C3 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
DEPDC4Q8N2C3 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
DEPDC4Q8N2C3 FEM1AP1-201ENST00000431297 1995 ntBASIC19.44■□□□□ 0.7
DEPDC4Q8N2C3 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
DEPDC4Q8N2C3 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
DEPDC4Q8N2C3 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.44■□□□□ 0.7
DEPDC4Q8N2C3 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
DEPDC4Q8N2C3 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
DEPDC4Q8N2C3 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.44■□□□□ 0.7
DEPDC4Q8N2C3 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
DEPDC4Q8N2C3 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
DEPDC4Q8N2C3 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.44■□□□□ 0.7
DEPDC4Q8N2C3 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
DEPDC4Q8N2C3 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
DEPDC4Q8N2C3 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.44■□□□□ 0.7
DEPDC4Q8N2C3 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
DEPDC4Q8N2C3 AC026471.6-201ENST00000622954 1905 ntBASIC19.44■□□□□ 0.7
DEPDC4Q8N2C3 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
DEPDC4Q8N2C3 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
DEPDC4Q8N2C3 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
DEPDC4Q8N2C3 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
DEPDC4Q8N2C3 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
DEPDC4Q8N2C3 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.44■□□□□ 0.7
DEPDC4Q8N2C3 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC19.43■□□□□ 0.7
DEPDC4Q8N2C3 OR7E47P-201ENST00000546390 1422 ntBASIC19.43■□□□□ 0.7
DEPDC4Q8N2C3 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
DEPDC4Q8N2C3 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.43■□□□□ 0.7
DEPDC4Q8N2C3 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
DEPDC4Q8N2C3 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.43■□□□□ 0.7
DEPDC4Q8N2C3 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.43■□□□□ 0.7
DEPDC4Q8N2C3 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.43■□□□□ 0.7
DEPDC4Q8N2C3 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.43■□□□□ 0.7
DEPDC4Q8N2C3 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.43■□□□□ 0.7
DEPDC4Q8N2C3 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
DEPDC4Q8N2C3 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
DEPDC4Q8N2C3 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.43■□□□□ 0.7
DEPDC4Q8N2C3 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
DEPDC4Q8N2C3 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
DEPDC4Q8N2C3 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
DEPDC4Q8N2C3 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
DEPDC4Q8N2C3 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
DEPDC4Q8N2C3 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
DEPDC4Q8N2C3 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
DEPDC4Q8N2C3 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
DEPDC4Q8N2C3 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
DEPDC4Q8N2C3 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.42■□□□□ 0.7
DEPDC4Q8N2C3 MIR4767-201ENST00000582827 78 ntBASIC19.42■□□□□ 0.7
DEPDC4Q8N2C3 AL499627.2-201ENST00000606283 725 ntBASIC19.42■□□□□ 0.7
DEPDC4Q8N2C3 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.42■□□□□ 0.7
DEPDC4Q8N2C3 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
DEPDC4Q8N2C3 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.42■□□□□ 0.7
DEPDC4Q8N2C3 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
DEPDC4Q8N2C3 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
DEPDC4Q8N2C3 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
DEPDC4Q8N2C3 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 SUDS3P1-201ENST00000505831 966 ntBASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.41■□□□□ 0.7
DEPDC4Q8N2C3 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
DEPDC4Q8N2C3 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
DEPDC4Q8N2C3 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms