Protein–RNA interactions for Protein: P78556

CCL20, C-C motif chemokine 20, humanhuman

Predictions only

Length 96 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL20P78556 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCL20P78556 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCL20P78556 AC022616.5-201ENST00000518796 181 ntBASIC16.57■□□□□ 0.24
CCL20P78556 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCL20P78556 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
CCL20P78556 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.57■□□□□ 0.24
CCL20P78556 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCL20P78556 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCL20P78556 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCL20P78556 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCL20P78556 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCL20P78556 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC16.57■□□□□ 0.24
CCL20P78556 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.56■□□□□ 0.24
CCL20P78556 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCL20P78556 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCL20P78556 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCL20P78556 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC16.56■□□□□ 0.24
CCL20P78556 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCL20P78556 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC16.56■□□□□ 0.24
CCL20P78556 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
CCL20P78556 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
CCL20P78556 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.56■□□□□ 0.24
CCL20P78556 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC16.56■□□□□ 0.24
CCL20P78556 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
CCL20P78556 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCL20P78556 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCL20P78556 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCL20P78556 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCL20P78556 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCL20P78556 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
CCL20P78556 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCL20P78556 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCL20P78556 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC16.55■□□□□ 0.24
CCL20P78556 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCL20P78556 ERF-202ENST00000440177 2032 ntTSL 2 BASIC16.55■□□□□ 0.24
CCL20P78556 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCL20P78556 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC16.55■□□□□ 0.24
CCL20P78556 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCL20P78556 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCL20P78556 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCL20P78556 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCL20P78556 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCL20P78556 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC16.55■□□□□ 0.24
CCL20P78556 LSM7-203ENST00000585409 512 ntTSL 2 BASIC16.55■□□□□ 0.24
CCL20P78556 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCL20P78556 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCL20P78556 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC16.55■□□□□ 0.24
CCL20P78556 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCL20P78556 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCL20P78556 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCL20P78556 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC16.55■□□□□ 0.24
CCL20P78556 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.55■□□□□ 0.24
CCL20P78556 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCL20P78556 DET1-207ENST00000564406 2315 ntTSL 2 BASIC16.54■□□□□ 0.24
CCL20P78556 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCL20P78556 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCL20P78556 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC16.54■□□□□ 0.24
CCL20P78556 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC16.54■□□□□ 0.24
CCL20P78556 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCL20P78556 AL162377.1-201ENST00000618844 1793 ntBASIC16.54■□□□□ 0.24
CCL20P78556 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCL20P78556 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCL20P78556 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC16.54■□□□□ 0.24
CCL20P78556 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC16.54■□□□□ 0.24
CCL20P78556 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCL20P78556 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCL20P78556 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC16.54■□□□□ 0.24
CCL20P78556 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC16.54■□□□□ 0.24
CCL20P78556 MIR4281-201ENST00000580852 62 ntBASIC16.54■□□□□ 0.24
CCL20P78556 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC16.54■□□□□ 0.24
CCL20P78556 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCL20P78556 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC16.54■□□□□ 0.24
CCL20P78556 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
CCL20P78556 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC16.54■□□□□ 0.24
CCL20P78556 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCL20P78556 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCL20P78556 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCL20P78556 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC16.54■□□□□ 0.24
CCL20P78556 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC16.54■□□□□ 0.24
CCL20P78556 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC16.54■□□□□ 0.24
CCL20P78556 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
CCL20P78556 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCL20P78556 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC16.53■□□□□ 0.24
CCL20P78556 AL512408.1-201ENST00000569378 2000 ntBASIC16.53■□□□□ 0.24
CCL20P78556 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CCL20P78556 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CCL20P78556 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCL20P78556 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCL20P78556 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCL20P78556 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCL20P78556 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCL20P78556 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC16.53■□□□□ 0.24
CCL20P78556 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCL20P78556 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCL20P78556 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCL20P78556 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCL20P78556 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCL20P78556 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCL20P78556 AC079089.2-201ENST00000531211 1277 ntBASIC16.53■□□□□ 0.24
CCL20P78556 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms