Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
LSM3P62310 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LSM3P62310 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LSM3P62310 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LSM3P62310 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LSM3P62310 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
LSM3P62310 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
LSM3P62310 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LSM3P62310 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC18.92■□□□□ 0.62
LSM3P62310 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
LSM3P62310 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC18.92■□□□□ 0.62
LSM3P62310 DUX4L4-201ENST00000566884 1269 ntBASIC18.92■□□□□ 0.62
LSM3P62310 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LSM3P62310 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LSM3P62310 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LSM3P62310 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LSM3P62310 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LSM3P62310 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LSM3P62310 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LSM3P62310 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
LSM3P62310 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC18.92■□□□□ 0.62
LSM3P62310 AC006128.1-201ENST00000624704 1661 ntBASIC18.92■□□□□ 0.62
LSM3P62310 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.92■□□□□ 0.62
LSM3P62310 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LSM3P62310 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LSM3P62310 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LSM3P62310 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC18.91■□□□□ 0.62
LSM3P62310 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LSM3P62310 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.91■□□□□ 0.62
LSM3P62310 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LSM3P62310 AC022616.5-201ENST00000518796 181 ntBASIC18.91■□□□□ 0.62
LSM3P62310 LSM7-203ENST00000585409 512 ntTSL 2 BASIC18.91■□□□□ 0.62
LSM3P62310 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.91■□□□□ 0.62
LSM3P62310 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC18.91■□□□□ 0.62
LSM3P62310 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LSM3P62310 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LSM3P62310 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LSM3P62310 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.91■□□□□ 0.62
LSM3P62310 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM3P62310 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM3P62310 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM3P62310 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM3P62310 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM3P62310 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM3P62310 MIR4281-201ENST00000580852 62 ntBASIC18.9■□□□□ 0.62
LSM3P62310 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
LSM3P62310 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
LSM3P62310 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
LSM3P62310 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.9■□□□□ 0.62
LSM3P62310 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LSM3P62310 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM3P62310 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LSM3P62310 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
LSM3P62310 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LSM3P62310 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.62
LSM3P62310 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.89■□□□□ 0.62
LSM3P62310 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC18.89■□□□□ 0.62
LSM3P62310 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LSM3P62310 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.89■□□□□ 0.61
LSM3P62310 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC18.89■□□□□ 0.61
LSM3P62310 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LSM3P62310 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC18.89■□□□□ 0.61
LSM3P62310 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC18.89■□□□□ 0.61
LSM3P62310 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
LSM3P62310 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LSM3P62310 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC18.89■□□□□ 0.61
LSM3P62310 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LSM3P62310 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC18.89■□□□□ 0.61
LSM3P62310 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LSM3P62310 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.89■□□□□ 0.61
LSM3P62310 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LSM3P62310 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LSM3P62310 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LSM3P62310 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LSM3P62310 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LSM3P62310 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LSM3P62310 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LSM3P62310 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LSM3P62310 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LSM3P62310 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LSM3P62310 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.88■□□□□ 0.61
LSM3P62310 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LSM3P62310 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
LSM3P62310 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.88■□□□□ 0.61
LSM3P62310 PARN-205ENST00000539279 1557 ntTSL 2 BASIC18.88■□□□□ 0.61
LSM3P62310 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
LSM3P62310 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LSM3P62310 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.88■□□□□ 0.61
LSM3P62310 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LSM3P62310 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LSM3P62310 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LSM3P62310 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
LSM3P62310 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LSM3P62310 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.87■□□□□ 0.61
LSM3P62310 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LSM3P62310 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LSM3P62310 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LSM3P62310 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LSM3P62310 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LSM3P62310 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms