Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DQA1P01909 BHLHE23-202ENST00000612929 1109 ntBASIC15.79■□□□□ 0.12
HLA-DQA1P01909 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DQA1P01909 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DQA1P01909 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DQA1P01909 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DQA1P01909 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
HLA-DQA1P01909 BID-204ENST00000399767 2129 ntTSL 2 BASIC15.79■□□□□ 0.12
HLA-DQA1P01909 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC15.79■□□□□ 0.12
HLA-DQA1P01909 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DQA1P01909 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC15.78■□□□□ 0.12
HLA-DQA1P01909 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DQA1P01909 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC15.78■□□□□ 0.12
HLA-DQA1P01909 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DQA1P01909 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DQA1P01909 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DQA1P01909 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DQA1P01909 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
HLA-DQA1P01909 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
HLA-DQA1P01909 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DQA1P01909 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC15.78■□□□□ 0.12
HLA-DQA1P01909 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC15.78■□□□□ 0.12
HLA-DQA1P01909 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DQA1P01909 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC15.78■□□□□ 0.12
HLA-DQA1P01909 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DQA1P01909 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DQA1P01909 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
HLA-DQA1P01909 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
HLA-DQA1P01909 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC15.78■□□□□ 0.12
HLA-DQA1P01909 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DQA1P01909 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC15.78■□□□□ 0.12
HLA-DQA1P01909 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DQA1P01909 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
HLA-DQA1P01909 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DQA1P01909 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC15.77■□□□□ 0.12
HLA-DQA1P01909 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC15.77■□□□□ 0.12
HLA-DQA1P01909 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC15.77■□□□□ 0.12
HLA-DQA1P01909 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC15.77■□□□□ 0.12
HLA-DQA1P01909 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DQA1P01909 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC15.77■□□□□ 0.12
HLA-DQA1P01909 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DQA1P01909 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DQA1P01909 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DQA1P01909 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DQA1P01909 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DQA1P01909 IDNK-203ENST00000405990 629 ntTSL 2 BASIC15.77■□□□□ 0.12
HLA-DQA1P01909 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DQA1P01909 AC012354.3-201ENST00000623734 483 ntBASIC15.77■□□□□ 0.12
HLA-DQA1P01909 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC15.77■□□□□ 0.12
HLA-DQA1P01909 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
HLA-DQA1P01909 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC15.77■□□□□ 0.11
HLA-DQA1P01909 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HLA-DQA1P01909 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
HLA-DQA1P01909 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC15.77■□□□□ 0.11
HLA-DQA1P01909 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.11
HLA-DQA1P01909 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
HLA-DQA1P01909 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
HLA-DQA1P01909 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
HLA-DQA1P01909 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC15.77■□□□□ 0.11
HLA-DQA1P01909 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 AC006128.1-201ENST00000624704 1661 ntBASIC15.76■□□□□ 0.11
HLA-DQA1P01909 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DQA1P01909 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DQA1P01909 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DQA1P01909 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DQA1P01909 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
HLA-DQA1P01909 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
HLA-DQA1P01909 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DQA1P01909 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DQA1P01909 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC15.75■□□□□ 0.11
HLA-DQA1P01909 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC15.75■□□□□ 0.11
HLA-DQA1P01909 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DQA1P01909 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DQA1P01909 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC15.75■□□□□ 0.11
HLA-DQA1P01909 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DQA1P01909 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms