Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
TNFP01375 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.6■□□□□ 0.89
TNFP01375 AL138781.1-201ENST00000566567 1274 ntBASIC20.6■□□□□ 0.89
TNFP01375 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.6■□□□□ 0.89
TNFP01375 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.6■□□□□ 0.89
TNFP01375 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
TNFP01375 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TNFP01375 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TNFP01375 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TNFP01375 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
TNFP01375 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
TNFP01375 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TNFP01375 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.59■□□□□ 0.89
TNFP01375 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TNFP01375 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.59■□□□□ 0.89
TNFP01375 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.59■□□□□ 0.89
TNFP01375 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.59■□□□□ 0.89
TNFP01375 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TNFP01375 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
TNFP01375 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TNFP01375 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TNFP01375 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TNFP01375 MKRN4P-201ENST00000444706 1521 ntBASIC20.58■□□□□ 0.89
TNFP01375 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
TNFP01375 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
TNFP01375 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TNFP01375 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TNFP01375 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TNFP01375 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TNFP01375 AL512625.2-201ENST00000417533 625 ntBASIC20.58■□□□□ 0.89
TNFP01375 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
TNFP01375 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TNFP01375 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.58■□□□□ 0.89
TNFP01375 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TNFP01375 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.58■□□□□ 0.89
TNFP01375 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
TNFP01375 AC133041.1-202ENST00000642053 222 ntBASIC20.58■□□□□ 0.89
TNFP01375 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
TNFP01375 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.58■□□□□ 0.89
TNFP01375 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
TNFP01375 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
TNFP01375 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
TNFP01375 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TNFP01375 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TNFP01375 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TNFP01375 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TNFP01375 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.57■□□□□ 0.88
TNFP01375 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TNFP01375 AL162412.1-201ENST00000567129 965 ntBASIC20.57■□□□□ 0.88
TNFP01375 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.57■□□□□ 0.88
TNFP01375 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
TNFP01375 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TNFP01375 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TNFP01375 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.56■□□□□ 0.88
TNFP01375 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TNFP01375 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
TNFP01375 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
TNFP01375 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TNFP01375 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TNFP01375 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.56■□□□□ 0.88
TNFP01375 AC016405.3-201ENST00000607710 860 ntBASIC20.56■□□□□ 0.88
TNFP01375 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.56■□□□□ 0.88
TNFP01375 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TNFP01375 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
TNFP01375 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TNFP01375 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TNFP01375 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TNFP01375 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
TNFP01375 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TNFP01375 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TNFP01375 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TNFP01375 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TNFP01375 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TNFP01375 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
TNFP01375 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
TNFP01375 AC069152.1-201ENST00000438030 544 ntBASIC20.55■□□□□ 0.88
TNFP01375 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TNFP01375 AC245052.3-201ENST00000450182 901 ntBASIC20.55■□□□□ 0.88
TNFP01375 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.55■□□□□ 0.88
TNFP01375 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.55■□□□□ 0.88
TNFP01375 MIR4758-201ENST00000577688 71 ntBASIC20.55■□□□□ 0.88
TNFP01375 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.55■□□□□ 0.88
TNFP01375 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
TNFP01375 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.55■□□□□ 0.88
TNFP01375 AC233723.2-201ENST00000623798 2106 ntBASIC20.55■□□□□ 0.88
TNFP01375 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TNFP01375 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TNFP01375 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.54■□□□□ 0.88
TNFP01375 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TNFP01375 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.54■□□□□ 0.88
TNFP01375 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TNFP01375 GUSBP5-202ENST00000510805 1989 ntBASIC20.54■□□□□ 0.88
TNFP01375 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TNFP01375 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.54■□□□□ 0.88
TNFP01375 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TNFP01375 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TNFP01375 MIPEPP3-201ENST00000412105 444 ntBASIC20.54■□□□□ 0.88
TNFP01375 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TNFP01375 AC093787.1-201ENST00000450396 207 ntBASIC20.54■□□□□ 0.88
TNFP01375 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms