Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
ABCA1O95477 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
ABCA1O95477 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.58■□□□□ 0.4
ABCA1O95477 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
ABCA1O95477 EEF1DP3-203ENST00000566025 782 ntBASIC17.58■□□□□ 0.4
ABCA1O95477 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
ABCA1O95477 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
ABCA1O95477 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ABCA1O95477 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
ABCA1O95477 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ABCA1O95477 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
ABCA1O95477 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC17.57■□□□□ 0.4
ABCA1O95477 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
ABCA1O95477 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.57■□□□□ 0.4
ABCA1O95477 AC092118.2-201ENST00000613495 667 ntBASIC17.57■□□□□ 0.4
ABCA1O95477 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
ABCA1O95477 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
ABCA1O95477 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
ABCA1O95477 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
ABCA1O95477 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ABCA1O95477 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC17.56■□□□□ 0.4
ABCA1O95477 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.56■□□□□ 0.4
ABCA1O95477 AC008550.1-201ENST00000511500 884 ntBASIC17.56■□□□□ 0.4
ABCA1O95477 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC17.56■□□□□ 0.4
ABCA1O95477 AL034346.1-201ENST00000568244 1277 ntBASIC17.56■□□□□ 0.4
ABCA1O95477 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
ABCA1O95477 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
ABCA1O95477 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ABCA1O95477 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.56■□□□□ 0.4
ABCA1O95477 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ABCA1O95477 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
ABCA1O95477 NAA20-201ENST00000310450 920 ntTSL 2 BASIC17.56■□□□□ 0.4
ABCA1O95477 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC17.56■□□□□ 0.4
ABCA1O95477 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC17.56■□□□□ 0.4
ABCA1O95477 AL162412.1-201ENST00000567129 965 ntBASIC17.56■□□□□ 0.4
ABCA1O95477 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ABCA1O95477 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
ABCA1O95477 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
ABCA1O95477 GALC-202ENST00000393568 2054 ntTSL 2 BASIC17.56■□□□□ 0.4
ABCA1O95477 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ABCA1O95477 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC17.55■□□□□ 0.4
ABCA1O95477 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
ABCA1O95477 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ABCA1O95477 MIPEPP3-201ENST00000412105 444 ntBASIC17.55■□□□□ 0.4
ABCA1O95477 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
ABCA1O95477 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.55■□□□□ 0.4
ABCA1O95477 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC17.55■□□□□ 0.4
ABCA1O95477 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.55■□□□□ 0.4
ABCA1O95477 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC17.55■□□□□ 0.4
ABCA1O95477 AC006058.3-201ENST00000606217 1069 ntBASIC17.55■□□□□ 0.4
ABCA1O95477 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ABCA1O95477 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
ABCA1O95477 EP400NL-214ENST00000641289 2402 ntBASIC17.55■□□□□ 0.4
ABCA1O95477 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
ABCA1O95477 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ABCA1O95477 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.55■□□□□ 0.4
ABCA1O95477 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC17.55■□□□□ 0.4
ABCA1O95477 AL596275.1-201ENST00000423464 877 ntBASIC17.55■□□□□ 0.4
ABCA1O95477 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.55■□□□□ 0.4
ABCA1O95477 AP006294.2-201ENST00000641667 209 ntBASIC17.55■□□□□ 0.4
ABCA1O95477 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ABCA1O95477 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ABCA1O95477 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ABCA1O95477 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ABCA1O95477 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
ABCA1O95477 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC17.54■□□□□ 0.4
ABCA1O95477 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ABCA1O95477 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
ABCA1O95477 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC17.54■□□□□ 0.4
ABCA1O95477 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
ABCA1O95477 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ABCA1O95477 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC17.54■□□□□ 0.4
ABCA1O95477 USP36-216ENST00000589424 970 ntTSL 5 BASIC17.54■□□□□ 0.4
ABCA1O95477 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ABCA1O95477 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ABCA1O95477 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ABCA1O95477 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ABCA1O95477 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ABCA1O95477 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ABCA1O95477 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
ABCA1O95477 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC17.54■□□□□ 0.4
ABCA1O95477 PLLP-204ENST00000569059 665 ntTSL 3 BASIC17.54■□□□□ 0.4
ABCA1O95477 AC069236.1-201ENST00000604339 616 ntBASIC17.54■□□□□ 0.4
ABCA1O95477 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ABCA1O95477 OR7E47P-201ENST00000546390 1422 ntBASIC17.54■□□□□ 0.4
ABCA1O95477 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ABCA1O95477 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ABCA1O95477 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ABCA1O95477 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ABCA1O95477 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC17.53■□□□□ 0.4
ABCA1O95477 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ABCA1O95477 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC17.53■□□□□ 0.4
ABCA1O95477 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
ABCA1O95477 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
ABCA1O95477 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ABCA1O95477 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC17.53■□□□□ 0.4
ABCA1O95477 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ABCA1O95477 LINC00526-201ENST00000581067 1875 ntBASIC17.53■□□□□ 0.4
ABCA1O95477 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ABCA1O95477 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms