Protein–RNA interactions for Protein: O95475

SIX6, Homeobox protein SIX6, humanhuman

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX6O95475 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC17.58■□□□□ 0.41
SIX6O95475 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC17.58■□□□□ 0.41
SIX6O95475 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SIX6O95475 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SIX6O95475 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX6O95475 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX6O95475 AC120024.1-201ENST00000562672 995 ntBASIC17.58■□□□□ 0.4
SIX6O95475 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
SIX6O95475 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX6O95475 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX6O95475 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC17.58■□□□□ 0.4
SIX6O95475 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SIX6O95475 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.58■□□□□ 0.4
SIX6O95475 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.58■□□□□ 0.4
SIX6O95475 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX6O95475 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX6O95475 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX6O95475 AC098818.2-201ENST00000564925 2320 ntBASIC17.58■□□□□ 0.4
SIX6O95475 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SIX6O95475 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.58■□□□□ 0.4
SIX6O95475 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
SIX6O95475 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC17.57■□□□□ 0.4
SIX6O95475 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.57■□□□□ 0.4
SIX6O95475 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX6O95475 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX6O95475 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SIX6O95475 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX6O95475 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SIX6O95475 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC17.57■□□□□ 0.4
SIX6O95475 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX6O95475 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SIX6O95475 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX6O95475 AC027702.1-201ENST00000563810 1770 ntBASIC17.57■□□□□ 0.4
SIX6O95475 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.57■□□□□ 0.4
SIX6O95475 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
SIX6O95475 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SIX6O95475 SMG8-203ENST00000578922 2178 ntBASIC17.57■□□□□ 0.4
SIX6O95475 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC17.57■□□□□ 0.4
SIX6O95475 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX6O95475 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
SIX6O95475 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX6O95475 PARN-205ENST00000539279 1557 ntTSL 2 BASIC17.57■□□□□ 0.4
SIX6O95475 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX6O95475 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX6O95475 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.56■□□□□ 0.4
SIX6O95475 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
SIX6O95475 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX6O95475 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX6O95475 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX6O95475 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX6O95475 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
SIX6O95475 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX6O95475 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX6O95475 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC17.56■□□□□ 0.4
SIX6O95475 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC17.56■□□□□ 0.4
SIX6O95475 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.56■□□□□ 0.4
SIX6O95475 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX6O95475 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX6O95475 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SIX6O95475 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SIX6O95475 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SIX6O95475 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX6O95475 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
SIX6O95475 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.56■□□□□ 0.4
SIX6O95475 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX6O95475 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX6O95475 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX6O95475 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SIX6O95475 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX6O95475 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX6O95475 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SIX6O95475 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX6O95475 AC018445.3-201ENST00000624177 1945 ntBASIC17.55■□□□□ 0.4
SIX6O95475 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX6O95475 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX6O95475 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX6O95475 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX6O95475 GPX1-201ENST00000419349 1106 ntBASIC17.55■□□□□ 0.4
SIX6O95475 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC17.55■□□□□ 0.4
SIX6O95475 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC17.55■□□□□ 0.4
SIX6O95475 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX6O95475 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SIX6O95475 PLK5-205ENST00000642079 1969 ntBASIC17.55■□□□□ 0.4
SIX6O95475 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX6O95475 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX6O95475 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX6O95475 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SIX6O95475 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX6O95475 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SIX6O95475 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX6O95475 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX6O95475 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC17.54■□□□□ 0.4
SIX6O95475 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX6O95475 AC022616.5-201ENST00000518796 181 ntBASIC17.54■□□□□ 0.4
SIX6O95475 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC17.54■□□□□ 0.4
SIX6O95475 LSM7-203ENST00000585409 512 ntTSL 2 BASIC17.54■□□□□ 0.4
SIX6O95475 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SIX6O95475 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX6O95475 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SIX6O95475 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms