Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV1-1A0A0B4J248 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV1-1A0A0B4J248 AC099778.1-201ENST00000568593 1911 ntBASIC16.45■□□□□ 0.22
TRAV1-1A0A0B4J248 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
TRAV1-1A0A0B4J248 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 AC112907.3-201ENST00000577781 2400 ntBASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 AL512408.1-201ENST00000569378 2000 ntBASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 MCC-208ENST00000514701 2855 ntTSL 2 BASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC16.44■□□□□ 0.22
TRAV1-1A0A0B4J248 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV1-1A0A0B4J248 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC16.43■□□□□ 0.22
TRAV1-1A0A0B4J248 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV1-1A0A0B4J248 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
TRAV1-1A0A0B4J248 PALM-207ENST00000590161 2137 ntTSL 4 BASIC16.43■□□□□ 0.22
TRAV1-1A0A0B4J248 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV1-1A0A0B4J248 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV1-1A0A0B4J248 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV1-1A0A0B4J248 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV1-1A0A0B4J248 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC16.43■□□□□ 0.22
TRAV1-1A0A0B4J248 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV1-1A0A0B4J248 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV1-1A0A0B4J248 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV1-1A0A0B4J248 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV1-1A0A0B4J248 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
TRAV1-1A0A0B4J248 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV1-1A0A0B4J248 AC116562.4-201ENST00000641316 2276 ntBASIC16.43■□□□□ 0.22
TRAV1-1A0A0B4J248 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV1-1A0A0B4J248 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV1-1A0A0B4J248 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV1-1A0A0B4J248 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV1-1A0A0B4J248 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
TRAV1-1A0A0B4J248 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 AC121338.2-201ENST00000622535 1744 ntBASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC16.42■□□□□ 0.22
TRAV1-1A0A0B4J248 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAV1-1A0A0B4J248 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRAV1-1A0A0B4J248 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRAV1-1A0A0B4J248 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAV1-1A0A0B4J248 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAV1-1A0A0B4J248 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAV1-1A0A0B4J248 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAV1-1A0A0B4J248 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAV1-1A0A0B4J248 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC16.41■□□□□ 0.22
TRAV1-1A0A0B4J248 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
TRAV1-1A0A0B4J248 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC16.41■□□□□ 0.22
TRAV1-1A0A0B4J248 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
TRAV1-1A0A0B4J248 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRAV1-1A0A0B4J248 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC16.41■□□□□ 0.22
TRAV1-1A0A0B4J248 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAV1-1A0A0B4J248 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
TRAV1-1A0A0B4J248 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC16.41■□□□□ 0.22
TRAV1-1A0A0B4J248 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
TRAV1-1A0A0B4J248 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
TRAV1-1A0A0B4J248 TNXA-203ENST00000507684 2038 ntBASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms