Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV1-2A0A0B4J238 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC18.3■□□□□ 0.52
TRAV1-2A0A0B4J238 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 LSM4-201ENST00000252816 986 ntTSL 2 BASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 RNF146-205ENST00000477776 762 ntTSL 3 BASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 AL033527.3-201ENST00000566366 1196 ntBASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 AC121338.2-201ENST00000622535 1744 ntBASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAV1-2A0A0B4J238 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.28■□□□□ 0.52
TRAV1-2A0A0B4J238 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
TRAV1-2A0A0B4J238 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV1-2A0A0B4J238 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV1-2A0A0B4J238 NARF-205ENST00000412079 1760 ntTSL 5 BASIC18.28■□□□□ 0.52
TRAV1-2A0A0B4J238 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
TRAV1-2A0A0B4J238 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV1-2A0A0B4J238 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV1-2A0A0B4J238 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV1-2A0A0B4J238 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
TRAV1-2A0A0B4J238 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV1-2A0A0B4J238 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV1-2A0A0B4J238 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
TRAV1-2A0A0B4J238 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV1-2A0A0B4J238 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV1-2A0A0B4J238 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV1-2A0A0B4J238 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAV1-2A0A0B4J238 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAV1-2A0A0B4J238 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
TRAV1-2A0A0B4J238 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.27■□□□□ 0.52
TRAV1-2A0A0B4J238 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TRAV1-2A0A0B4J238 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
TRAV1-2A0A0B4J238 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.27■□□□□ 0.52
TRAV1-2A0A0B4J238 AFG3L1P-217ENST00000557444 2447 ntBASIC18.27■□□□□ 0.52
TRAV1-2A0A0B4J238 MIR4787-201ENST00000607364 84 ntBASIC18.27■□□□□ 0.52
TRAV1-2A0A0B4J238 AC007225.1-201ENST00000566331 1836 ntBASIC18.27■□□□□ 0.52
TRAV1-2A0A0B4J238 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAV1-2A0A0B4J238 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.52
TRAV1-2A0A0B4J238 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.27■□□□□ 0.51
TRAV1-2A0A0B4J238 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
TRAV1-2A0A0B4J238 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV1-2A0A0B4J238 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV1-2A0A0B4J238 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
TRAV1-2A0A0B4J238 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
TRAV1-2A0A0B4J238 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV1-2A0A0B4J238 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV1-2A0A0B4J238 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV1-2A0A0B4J238 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV1-2A0A0B4J238 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
TRAV1-2A0A0B4J238 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC18.26■□□□□ 0.51
TRAV1-2A0A0B4J238 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
TRAV1-2A0A0B4J238 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.26■□□□□ 0.51
TRAV1-2A0A0B4J238 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
TRAV1-2A0A0B4J238 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV1-2A0A0B4J238 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV1-2A0A0B4J238 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRAV1-2A0A0B4J238 STX5-203ENST00000394690 1568 ntTSL 5 BASIC18.25■□□□□ 0.51
TRAV1-2A0A0B4J238 AL391422.3-201ENST00000603791 2761 ntBASIC18.25■□□□□ 0.51
TRAV1-2A0A0B4J238 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV1-2A0A0B4J238 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.25■□□□□ 0.51
TRAV1-2A0A0B4J238 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.25■□□□□ 0.51
TRAV1-2A0A0B4J238 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV1-2A0A0B4J238 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.25■□□□□ 0.51
TRAV1-2A0A0B4J238 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV1-2A0A0B4J238 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV1-2A0A0B4J238 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV1-2A0A0B4J238 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
TRAV1-2A0A0B4J238 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV1-2A0A0B4J238 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
TRAV1-2A0A0B4J238 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.25■□□□□ 0.51
TRAV1-2A0A0B4J238 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV1-2A0A0B4J238 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV1-2A0A0B4J238 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.25■□□□□ 0.51
TRAV1-2A0A0B4J238 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV1-2A0A0B4J238 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV1-2A0A0B4J238 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
TRAV1-2A0A0B4J238 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV1-2A0A0B4J238 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAV1-2A0A0B4J238 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC18.25■□□□□ 0.51
TRAV1-2A0A0B4J238 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.24■□□□□ 0.51
TRAV1-2A0A0B4J238 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRAV1-2A0A0B4J238 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms