Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
DDX56Q9NY93 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
DDX56Q9NY93 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.94■■□□□ 1.1
DDX56Q9NY93 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.94■■□□□ 1.1
DDX56Q9NY93 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.94■■□□□ 1.1
DDX56Q9NY93 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.94■■□□□ 1.1
DDX56Q9NY93 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.94■■□□□ 1.1
DDX56Q9NY93 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
DDX56Q9NY93 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.94■■□□□ 1.1
DDX56Q9NY93 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.94■■□□□ 1.1
DDX56Q9NY93 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
DDX56Q9NY93 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
DDX56Q9NY93 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.94■■□□□ 1.1
DDX56Q9NY93 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
DDX56Q9NY93 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
DDX56Q9NY93 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
DDX56Q9NY93 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
DDX56Q9NY93 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
DDX56Q9NY93 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
DDX56Q9NY93 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.93■■□□□ 1.1
DDX56Q9NY93 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
DDX56Q9NY93 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
DDX56Q9NY93 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
DDX56Q9NY93 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
DDX56Q9NY93 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.93■■□□□ 1.1
DDX56Q9NY93 SUDS3P1-201ENST00000505831 966 ntBASIC21.93■■□□□ 1.1
DDX56Q9NY93 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
DDX56Q9NY93 AL139246.5-201ENST00000606645 996 ntBASIC21.93■■□□□ 1.1
DDX56Q9NY93 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
DDX56Q9NY93 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.93■■□□□ 1.1
DDX56Q9NY93 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
DDX56Q9NY93 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
DDX56Q9NY93 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.92■■□□□ 1.1
DDX56Q9NY93 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
DDX56Q9NY93 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.92■■□□□ 1.1
DDX56Q9NY93 AC012414.1-201ENST00000556676 535 ntBASIC21.92■■□□□ 1.1
DDX56Q9NY93 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.92■■□□□ 1.1
DDX56Q9NY93 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
DDX56Q9NY93 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
DDX56Q9NY93 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.92■■□□□ 1.1
DDX56Q9NY93 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
DDX56Q9NY93 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.91■■□□□ 1.1
DDX56Q9NY93 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX56Q9NY93 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
DDX56Q9NY93 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX56Q9NY93 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.91■■□□□ 1.1
DDX56Q9NY93 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
DDX56Q9NY93 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.91■■□□□ 1.1
DDX56Q9NY93 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX56Q9NY93 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.91■■□□□ 1.1
DDX56Q9NY93 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21.91■■□□□ 1.1
DDX56Q9NY93 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC21.91■■□□□ 1.1
DDX56Q9NY93 RALB-208ENST00000631312 311 ntTSL 5 BASIC21.91■■□□□ 1.1
DDX56Q9NY93 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX56Q9NY93 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
DDX56Q9NY93 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.9■■□□□ 1.1
DDX56Q9NY93 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
DDX56Q9NY93 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
DDX56Q9NY93 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.9■■□□□ 1.1
DDX56Q9NY93 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.9■■□□□ 1.1
DDX56Q9NY93 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
DDX56Q9NY93 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
DDX56Q9NY93 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
DDX56Q9NY93 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.9■■□□□ 1.1
DDX56Q9NY93 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.9■■□□□ 1.1
DDX56Q9NY93 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
DDX56Q9NY93 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
DDX56Q9NY93 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
DDX56Q9NY93 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.89■■□□□ 1.1
DDX56Q9NY93 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
DDX56Q9NY93 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
DDX56Q9NY93 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.1
DDX56Q9NY93 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
DDX56Q9NY93 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
DDX56Q9NY93 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
DDX56Q9NY93 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
DDX56Q9NY93 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.89■■□□□ 1.09
DDX56Q9NY93 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
DDX56Q9NY93 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.89■■□□□ 1.09
DDX56Q9NY93 AL354811.1-201ENST00000610286 706 ntBASIC21.89■■□□□ 1.09
DDX56Q9NY93 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
DDX56Q9NY93 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.88■■□□□ 1.09
DDX56Q9NY93 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
DDX56Q9NY93 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
DDX56Q9NY93 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.88■■□□□ 1.09
DDX56Q9NY93 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
DDX56Q9NY93 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.88■■□□□ 1.09
DDX56Q9NY93 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.88■■□□□ 1.09
DDX56Q9NY93 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.88■■□□□ 1.09
DDX56Q9NY93 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
DDX56Q9NY93 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.88■■□□□ 1.09
DDX56Q9NY93 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
DDX56Q9NY93 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
DDX56Q9NY93 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
DDX56Q9NY93 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
DDX56Q9NY93 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
DDX56Q9NY93 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
DDX56Q9NY93 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
DDX56Q9NY93 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
DDX56Q9NY93 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms