Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
EXOSC3Q9NQT5 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.28■□□□□ 0.68
EXOSC3Q9NQT5 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.28■□□□□ 0.68
EXOSC3Q9NQT5 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC19.28■□□□□ 0.68
EXOSC3Q9NQT5 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.28■□□□□ 0.68
EXOSC3Q9NQT5 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
EXOSC3Q9NQT5 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
EXOSC3Q9NQT5 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
EXOSC3Q9NQT5 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
EXOSC3Q9NQT5 FEM1AP4-201ENST00000443167 1987 ntBASIC19.28■□□□□ 0.68
EXOSC3Q9NQT5 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.28■□□□□ 0.68
EXOSC3Q9NQT5 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
EXOSC3Q9NQT5 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
EXOSC3Q9NQT5 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
EXOSC3Q9NQT5 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.27■□□□□ 0.68
EXOSC3Q9NQT5 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
EXOSC3Q9NQT5 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
EXOSC3Q9NQT5 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
EXOSC3Q9NQT5 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.27■□□□□ 0.68
EXOSC3Q9NQT5 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
EXOSC3Q9NQT5 YBX1P1-201ENST00000445822 960 ntBASIC19.27■□□□□ 0.68
EXOSC3Q9NQT5 AC079140.4-201ENST00000507448 529 ntBASIC19.27■□□□□ 0.68
EXOSC3Q9NQT5 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
EXOSC3Q9NQT5 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
EXOSC3Q9NQT5 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
EXOSC3Q9NQT5 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
EXOSC3Q9NQT5 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
EXOSC3Q9NQT5 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.27■□□□□ 0.67
EXOSC3Q9NQT5 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.26■□□□□ 0.67
EXOSC3Q9NQT5 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
EXOSC3Q9NQT5 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
EXOSC3Q9NQT5 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
EXOSC3Q9NQT5 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
EXOSC3Q9NQT5 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
EXOSC3Q9NQT5 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.26■□□□□ 0.67
EXOSC3Q9NQT5 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
EXOSC3Q9NQT5 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
EXOSC3Q9NQT5 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.26■□□□□ 0.67
EXOSC3Q9NQT5 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
EXOSC3Q9NQT5 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.26■□□□□ 0.67
EXOSC3Q9NQT5 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
EXOSC3Q9NQT5 KRT87P-202ENST00000534226 1464 ntBASIC19.26■□□□□ 0.67
EXOSC3Q9NQT5 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.26■□□□□ 0.67
EXOSC3Q9NQT5 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.26■□□□□ 0.67
EXOSC3Q9NQT5 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.26■□□□□ 0.67
EXOSC3Q9NQT5 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
EXOSC3Q9NQT5 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
EXOSC3Q9NQT5 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
EXOSC3Q9NQT5 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
EXOSC3Q9NQT5 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
EXOSC3Q9NQT5 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
EXOSC3Q9NQT5 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.25■□□□□ 0.67
EXOSC3Q9NQT5 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
EXOSC3Q9NQT5 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.25■□□□□ 0.67
EXOSC3Q9NQT5 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
EXOSC3Q9NQT5 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.25■□□□□ 0.67
EXOSC3Q9NQT5 ZNRF2P3-201ENST00000424200 374 ntBASIC19.25■□□□□ 0.67
EXOSC3Q9NQT5 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
EXOSC3Q9NQT5 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
EXOSC3Q9NQT5 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
EXOSC3Q9NQT5 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
EXOSC3Q9NQT5 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.24■□□□□ 0.67
EXOSC3Q9NQT5 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.24■□□□□ 0.67
EXOSC3Q9NQT5 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.24■□□□□ 0.67
EXOSC3Q9NQT5 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.24■□□□□ 0.67
EXOSC3Q9NQT5 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
EXOSC3Q9NQT5 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.24■□□□□ 0.67
EXOSC3Q9NQT5 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
EXOSC3Q9NQT5 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.23■□□□□ 0.67
EXOSC3Q9NQT5 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
EXOSC3Q9NQT5 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
EXOSC3Q9NQT5 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
EXOSC3Q9NQT5 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
EXOSC3Q9NQT5 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
EXOSC3Q9NQT5 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
EXOSC3Q9NQT5 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
EXOSC3Q9NQT5 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
EXOSC3Q9NQT5 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
EXOSC3Q9NQT5 TERF1P2-201ENST00000583350 1212 ntBASIC19.23■□□□□ 0.67
EXOSC3Q9NQT5 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
EXOSC3Q9NQT5 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.23■□□□□ 0.67
EXOSC3Q9NQT5 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.23■□□□□ 0.67
EXOSC3Q9NQT5 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
EXOSC3Q9NQT5 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
EXOSC3Q9NQT5 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
EXOSC3Q9NQT5 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.22■□□□□ 0.67
EXOSC3Q9NQT5 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
EXOSC3Q9NQT5 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
EXOSC3Q9NQT5 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
EXOSC3Q9NQT5 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.22■□□□□ 0.67
EXOSC3Q9NQT5 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
EXOSC3Q9NQT5 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
EXOSC3Q9NQT5 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
EXOSC3Q9NQT5 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
EXOSC3Q9NQT5 SP2-202ENST00000613139 908 ntTSL 5 BASIC19.22■□□□□ 0.67
EXOSC3Q9NQT5 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
EXOSC3Q9NQT5 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.22■□□□□ 0.67
EXOSC3Q9NQT5 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
EXOSC3Q9NQT5 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
EXOSC3Q9NQT5 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms