Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC22.98■■□□□ 1.27
LRCH3Q96II8 AC069544.1-201ENST00000609399 999 ntBASIC22.98■■□□□ 1.27
LRCH3Q96II8 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC22.98■■□□□ 1.27
LRCH3Q96II8 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
LRCH3Q96II8 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC22.98■■□□□ 1.27
LRCH3Q96II8 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
LRCH3Q96II8 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
LRCH3Q96II8 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC22.97■■□□□ 1.27
LRCH3Q96II8 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC22.97■■□□□ 1.27
LRCH3Q96II8 AL049637.2-201ENST00000641778 930 ntBASIC22.97■■□□□ 1.27
LRCH3Q96II8 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
LRCH3Q96II8 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC22.96■■□□□ 1.27
LRCH3Q96II8 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC22.96■■□□□ 1.27
LRCH3Q96II8 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC22.96■■□□□ 1.27
LRCH3Q96II8 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC22.96■■□□□ 1.27
LRCH3Q96II8 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC22.96■■□□□ 1.27
LRCH3Q96II8 AL355075.4-201ENST00000554988 638 ntBASIC22.96■■□□□ 1.27
LRCH3Q96II8 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC22.96■■□□□ 1.27
LRCH3Q96II8 MIR4785-201ENST00000585005 73 ntBASIC22.96■■□□□ 1.27
LRCH3Q96II8 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC22.96■■□□□ 1.27
LRCH3Q96II8 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC22.96■■□□□ 1.27
LRCH3Q96II8 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
LRCH3Q96II8 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
LRCH3Q96II8 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC22.96■■□□□ 1.27
LRCH3Q96II8 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC22.96■■□□□ 1.27
LRCH3Q96II8 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
LRCH3Q96II8 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
LRCH3Q96II8 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
LRCH3Q96II8 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
LRCH3Q96II8 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC22.95■■□□□ 1.26
LRCH3Q96II8 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC22.95■■□□□ 1.26
LRCH3Q96II8 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC22.95■■□□□ 1.26
LRCH3Q96II8 TK2-204ENST00000525974 1178 ntTSL 2 BASIC22.95■■□□□ 1.26
LRCH3Q96II8 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC22.95■■□□□ 1.26
LRCH3Q96II8 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC22.95■■□□□ 1.26
LRCH3Q96II8 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC22.94■■□□□ 1.26
LRCH3Q96II8 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC22.94■■□□□ 1.26
LRCH3Q96II8 KRT17P1-201ENST00000399211 1546 ntBASIC22.94■■□□□ 1.26
LRCH3Q96II8 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
LRCH3Q96II8 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC22.94■■□□□ 1.26
LRCH3Q96II8 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC22.94■■□□□ 1.26
LRCH3Q96II8 PNMA6B-201ENST00000538162 1200 ntBASIC22.94■■□□□ 1.26
LRCH3Q96II8 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC22.94■■□□□ 1.26
LRCH3Q96II8 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC22.94■■□□□ 1.26
LRCH3Q96II8 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
LRCH3Q96II8 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC22.94■■□□□ 1.26
LRCH3Q96II8 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
LRCH3Q96II8 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC22.93■■□□□ 1.26
LRCH3Q96II8 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC22.93■■□□□ 1.26
LRCH3Q96II8 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC22.93■■□□□ 1.26
LRCH3Q96II8 AL591742.1-201ENST00000604433 565 ntBASIC22.93■■□□□ 1.26
LRCH3Q96II8 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
LRCH3Q96II8 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
LRCH3Q96II8 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC22.93■■□□□ 1.26
LRCH3Q96II8 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC22.93■■□□□ 1.26
LRCH3Q96II8 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC22.93■■□□□ 1.26
LRCH3Q96II8 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
LRCH3Q96II8 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
LRCH3Q96II8 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC22.92■■□□□ 1.26
LRCH3Q96II8 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC22.92■■□□□ 1.26
LRCH3Q96II8 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
LRCH3Q96II8 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
LRCH3Q96II8 FXN-202ENST00000396364 980 ntTSL 5 BASIC22.92■■□□□ 1.26
LRCH3Q96II8 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC22.92■■□□□ 1.26
LRCH3Q96II8 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC22.92■■□□□ 1.26
LRCH3Q96II8 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC22.92■■□□□ 1.26
LRCH3Q96II8 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
LRCH3Q96II8 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC22.92■■□□□ 1.26
LRCH3Q96II8 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
LRCH3Q96II8 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC22.92■■□□□ 1.26
LRCH3Q96II8 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
LRCH3Q96II8 EI24-213ENST00000618552 1747 ntTSL 5 BASIC22.91■■□□□ 1.26
LRCH3Q96II8 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
LRCH3Q96II8 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
LRCH3Q96II8 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC22.91■■□□□ 1.26
LRCH3Q96II8 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
LRCH3Q96II8 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
LRCH3Q96II8 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
LRCH3Q96II8 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC22.91■■□□□ 1.26
LRCH3Q96II8 ISG20-202ENST00000379224 540 ntTSL 3 BASIC22.91■■□□□ 1.26
LRCH3Q96II8 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
LRCH3Q96II8 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC22.91■■□□□ 1.26
LRCH3Q96II8 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC22.91■■□□□ 1.26
LRCH3Q96II8 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC22.91■■□□□ 1.26
LRCH3Q96II8 AL162412.1-201ENST00000567129 965 ntBASIC22.91■■□□□ 1.26
LRCH3Q96II8 SNX21-213ENST00000614929 587 ntTSL 5 BASIC22.91■■□□□ 1.26
LRCH3Q96II8 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC22.91■■□□□ 1.26
LRCH3Q96II8 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC22.91■■□□□ 1.26
LRCH3Q96II8 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC22.91■■□□□ 1.26
LRCH3Q96II8 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
LRCH3Q96II8 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
LRCH3Q96II8 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC22.9■■□□□ 1.26
LRCH3Q96II8 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
LRCH3Q96II8 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
LRCH3Q96II8 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC22.9■■□□□ 1.26
LRCH3Q96II8 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
LRCH3Q96II8 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC22.9■■□□□ 1.26
LRCH3Q96II8 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC22.9■■□□□ 1.26
LRCH3Q96II8 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC22.9■■□□□ 1.26
LRCH3Q96II8 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms