Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 FAM201B-201ENST00000458407 597 ntBASIC25.1■■□□□ 1.61
NKX2-3Q8TAU0 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
NKX2-3Q8TAU0 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC25.1■■□□□ 1.61
NKX2-3Q8TAU0 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC25.1■■□□□ 1.61
NKX2-3Q8TAU0 AC093827.2-201ENST00000512654 315 ntBASIC25.1■■□□□ 1.61
NKX2-3Q8TAU0 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC25.1■■□□□ 1.61
NKX2-3Q8TAU0 AL121832.2-201ENST00000610979 668 ntBASIC25.1■■□□□ 1.61
NKX2-3Q8TAU0 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
NKX2-3Q8TAU0 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
NKX2-3Q8TAU0 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
NKX2-3Q8TAU0 FBXW4P1-201ENST00000426721 2239 ntBASIC25.09■■□□□ 1.61
NKX2-3Q8TAU0 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC25.09■■□□□ 1.61
NKX2-3Q8TAU0 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
NKX2-3Q8TAU0 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC25.09■■□□□ 1.61
NKX2-3Q8TAU0 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC25.09■■□□□ 1.61
NKX2-3Q8TAU0 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
NKX2-3Q8TAU0 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
NKX2-3Q8TAU0 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
NKX2-3Q8TAU0 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC25.09■■□□□ 1.61
NKX2-3Q8TAU0 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC25.09■■□□□ 1.61
NKX2-3Q8TAU0 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC25.09■■□□□ 1.61
NKX2-3Q8TAU0 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC25.09■■□□□ 1.61
NKX2-3Q8TAU0 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC25.09■■□□□ 1.61
NKX2-3Q8TAU0 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC25.09■■□□□ 1.61
NKX2-3Q8TAU0 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
NKX2-3Q8TAU0 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
NKX2-3Q8TAU0 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
NKX2-3Q8TAU0 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
NKX2-3Q8TAU0 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
NKX2-3Q8TAU0 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
NKX2-3Q8TAU0 AC079834.2-201ENST00000609776 1949 ntBASIC25.08■■□□□ 1.61
NKX2-3Q8TAU0 EEF1DP3-203ENST00000566025 782 ntBASIC25.08■■□□□ 1.61
NKX2-3Q8TAU0 GAMT-205ENST00000640762 751 ntTSL 5 BASIC25.08■■□□□ 1.61
NKX2-3Q8TAU0 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
NKX2-3Q8TAU0 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.61
NKX2-3Q8TAU0 KRT87P-202ENST00000534226 1464 ntBASIC25.08■■□□□ 1.6
NKX2-3Q8TAU0 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC25.08■■□□□ 1.6
NKX2-3Q8TAU0 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
NKX2-3Q8TAU0 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
NKX2-3Q8TAU0 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
NKX2-3Q8TAU0 WWC2-AS2-201ENST00000578387 2183 ntBASIC25.07■■□□□ 1.6
NKX2-3Q8TAU0 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
NKX2-3Q8TAU0 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC25.07■■□□□ 1.6
NKX2-3Q8TAU0 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
NKX2-3Q8TAU0 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
NKX2-3Q8TAU0 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
NKX2-3Q8TAU0 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC25.07■■□□□ 1.6
NKX2-3Q8TAU0 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
NKX2-3Q8TAU0 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC25.06■■□□□ 1.6
NKX2-3Q8TAU0 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
NKX2-3Q8TAU0 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC25.06■■□□□ 1.6
NKX2-3Q8TAU0 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC25.06■■□□□ 1.6
NKX2-3Q8TAU0 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC25.06■■□□□ 1.6
NKX2-3Q8TAU0 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC25.06■■□□□ 1.6
NKX2-3Q8TAU0 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
NKX2-3Q8TAU0 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
NKX2-3Q8TAU0 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
NKX2-3Q8TAU0 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC25.06■■□□□ 1.6
NKX2-3Q8TAU0 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC25.06■■□□□ 1.6
NKX2-3Q8TAU0 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC25.06■■□□□ 1.6
NKX2-3Q8TAU0 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
NKX2-3Q8TAU0 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC25.06■■□□□ 1.6
NKX2-3Q8TAU0 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
NKX2-3Q8TAU0 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
NKX2-3Q8TAU0 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
NKX2-3Q8TAU0 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
NKX2-3Q8TAU0 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
NKX2-3Q8TAU0 SERP1-208ENST00000491660 830 ntTSL 2 BASIC25.05■■□□□ 1.6
NKX2-3Q8TAU0 SPI1-203ENST00000533030 661 ntTSL 2 BASIC25.05■■□□□ 1.6
NKX2-3Q8TAU0 DET1-205ENST00000558413 583 ntTSL 4 BASIC25.05■■□□□ 1.6
NKX2-3Q8TAU0 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC25.05■■□□□ 1.6
NKX2-3Q8TAU0 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC25.05■■□□□ 1.6
NKX2-3Q8TAU0 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
NKX2-3Q8TAU0 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC25.04■■□□□ 1.6
NKX2-3Q8TAU0 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
NKX2-3Q8TAU0 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC25.04■■□□□ 1.6
NKX2-3Q8TAU0 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
NKX2-3Q8TAU0 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC25.04■■□□□ 1.6
NKX2-3Q8TAU0 TSPY6P-201ENST00000448518 926 ntBASIC25.04■■□□□ 1.6
NKX2-3Q8TAU0 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC25.04■■□□□ 1.6
NKX2-3Q8TAU0 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
NKX2-3Q8TAU0 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
NKX2-3Q8TAU0 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
NKX2-3Q8TAU0 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
NKX2-3Q8TAU0 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
NKX2-3Q8TAU0 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
NKX2-3Q8TAU0 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
NKX2-3Q8TAU0 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
NKX2-3Q8TAU0 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
NKX2-3Q8TAU0 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC25.04■■□□□ 1.6
NKX2-3Q8TAU0 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
NKX2-3Q8TAU0 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
NKX2-3Q8TAU0 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC25.03■■□□□ 1.6
NKX2-3Q8TAU0 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
NKX2-3Q8TAU0 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC25.03■■□□□ 1.6
NKX2-3Q8TAU0 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC25.03■■□□□ 1.6
NKX2-3Q8TAU0 RGMA-211ENST00000557420 989 ntTSL 3 BASIC25.03■■□□□ 1.6
NKX2-3Q8TAU0 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC25.03■■□□□ 1.6
NKX2-3Q8TAU0 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC25.03■■□□□ 1.6
NKX2-3Q8TAU0 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms