Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.43■□□□□ 0.7
ZNF540Q8NDQ6 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
ZNF540Q8NDQ6 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
ZNF540Q8NDQ6 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.43■□□□□ 0.7
ZNF540Q8NDQ6 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.43■□□□□ 0.7
ZNF540Q8NDQ6 OXCT2P1-201ENST00000447263 1535 ntBASIC19.43■□□□□ 0.7
ZNF540Q8NDQ6 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ZNF540Q8NDQ6 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
ZNF540Q8NDQ6 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.43■□□□□ 0.7
ZNF540Q8NDQ6 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
ZNF540Q8NDQ6 AC026471.6-201ENST00000622954 1905 ntBASIC19.43■□□□□ 0.7
ZNF540Q8NDQ6 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.43■□□□□ 0.7
ZNF540Q8NDQ6 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
ZNF540Q8NDQ6 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 MIR935-201ENST00000401179 91 ntBASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ZNF540Q8NDQ6 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF540Q8NDQ6 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.41■□□□□ 0.7
ZNF540Q8NDQ6 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF540Q8NDQ6 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.41■□□□□ 0.7
ZNF540Q8NDQ6 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF540Q8NDQ6 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF540Q8NDQ6 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
ZNF540Q8NDQ6 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF540Q8NDQ6 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
ZNF540Q8NDQ6 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF540Q8NDQ6 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF540Q8NDQ6 CLTA-206ENST00000466396 695 ntTSL 2 BASIC19.41■□□□□ 0.7
ZNF540Q8NDQ6 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC19.41■□□□□ 0.7
ZNF540Q8NDQ6 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.41■□□□□ 0.7
ZNF540Q8NDQ6 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF540Q8NDQ6 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
ZNF540Q8NDQ6 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
ZNF540Q8NDQ6 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF540Q8NDQ6 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ZNF540Q8NDQ6 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.4■□□□□ 0.7
ZNF540Q8NDQ6 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.4■□□□□ 0.7
ZNF540Q8NDQ6 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.4■□□□□ 0.7
ZNF540Q8NDQ6 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF540Q8NDQ6 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.4■□□□□ 0.7
ZNF540Q8NDQ6 AC110285.6-201ENST00000617652 491 ntBASIC19.4■□□□□ 0.7
ZNF540Q8NDQ6 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
ZNF540Q8NDQ6 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
ZNF540Q8NDQ6 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF540Q8NDQ6 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
ZNF540Q8NDQ6 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
ZNF540Q8NDQ6 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF540Q8NDQ6 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
ZNF540Q8NDQ6 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
ZNF540Q8NDQ6 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
ZNF540Q8NDQ6 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
ZNF540Q8NDQ6 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.39■□□□□ 0.69
ZNF540Q8NDQ6 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF540Q8NDQ6 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.39■□□□□ 0.69
ZNF540Q8NDQ6 SRD5A1P1-201ENST00000442297 786 ntBASIC19.39■□□□□ 0.69
ZNF540Q8NDQ6 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.39■□□□□ 0.69
ZNF540Q8NDQ6 QDPR-206ENST00000508623 601 ntTSL 3 BASIC19.39■□□□□ 0.69
ZNF540Q8NDQ6 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.39■□□□□ 0.69
ZNF540Q8NDQ6 AC005837.3-201ENST00000612163 286 ntBASIC19.39■□□□□ 0.69
ZNF540Q8NDQ6 AC005703.6-201ENST00000623265 1329 ntBASIC19.39■□□□□ 0.69
ZNF540Q8NDQ6 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF540Q8NDQ6 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF540Q8NDQ6 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.39■□□□□ 0.69
ZNF540Q8NDQ6 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF540Q8NDQ6 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF540Q8NDQ6 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.39■□□□□ 0.69
ZNF540Q8NDQ6 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF540Q8NDQ6 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF540Q8NDQ6 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.39■□□□□ 0.69
ZNF540Q8NDQ6 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms