Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC14.87□□□□□ -0.03
RPL39P62891 AC073314.1-201ENST00000568729 2216 ntBASIC14.87□□□□□ -0.03
RPL39P62891 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RPL39P62891 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
RPL39P62891 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
RPL39P62891 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC14.87□□□□□ -0.03
RPL39P62891 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC14.87□□□□□ -0.03
RPL39P62891 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC14.87□□□□□ -0.03
RPL39P62891 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC14.87□□□□□ -0.03
RPL39P62891 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
RPL39P62891 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
RPL39P62891 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
RPL39P62891 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RPL39P62891 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
RPL39P62891 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
RPL39P62891 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
RPL39P62891 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RPL39P62891 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC14.87□□□□□ -0.03
RPL39P62891 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC14.87□□□□□ -0.03
RPL39P62891 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RPL39P62891 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
RPL39P62891 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
RPL39P62891 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC14.87□□□□□ -0.03
RPL39P62891 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RPL39P62891 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
RPL39P62891 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
RPL39P62891 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RPL39P62891 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RPL39P62891 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RPL39P62891 AFG3L1P-217ENST00000557444 2447 ntBASIC14.86□□□□□ -0.03
RPL39P62891 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
RPL39P62891 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
RPL39P62891 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RPL39P62891 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC14.86□□□□□ -0.03
RPL39P62891 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC14.86□□□□□ -0.03
RPL39P62891 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RPL39P62891 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC14.86□□□□□ -0.03
RPL39P62891 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC14.86□□□□□ -0.03
RPL39P62891 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC14.86□□□□□ -0.03
RPL39P62891 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RPL39P62891 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
RPL39P62891 PALM-207ENST00000590161 2137 ntTSL 4 BASIC14.86□□□□□ -0.03
RPL39P62891 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
RPL39P62891 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
RPL39P62891 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC14.85□□□□□ -0.03
RPL39P62891 AP005212.1-201ENST00000581547 1997 ntBASIC14.85□□□□□ -0.03
RPL39P62891 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
RPL39P62891 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
RPL39P62891 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RPL39P62891 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC14.85□□□□□ -0.03
RPL39P62891 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RPL39P62891 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RPL39P62891 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC14.85□□□□□ -0.03
RPL39P62891 GABARAPL3-202ENST00000624044 1851 ntBASIC14.85□□□□□ -0.03
RPL39P62891 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RPL39P62891 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC14.85□□□□□ -0.03
RPL39P62891 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
RPL39P62891 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
RPL39P62891 CD72-202ENST00000378430 585 ntTSL 3 BASIC14.85□□□□□ -0.03
RPL39P62891 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC14.85□□□□□ -0.03
RPL39P62891 HES6-204ENST00000409182 863 ntTSL 2 BASIC14.85□□□□□ -0.03
RPL39P62891 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC14.85□□□□□ -0.03
RPL39P62891 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RPL39P62891 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC14.85□□□□□ -0.03
RPL39P62891 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC14.85□□□□□ -0.03
RPL39P62891 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RPL39P62891 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC14.85□□□□□ -0.03
RPL39P62891 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RPL39P62891 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RPL39P62891 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC14.84□□□□□ -0.03
RPL39P62891 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RPL39P62891 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC14.84□□□□□ -0.03
RPL39P62891 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
RPL39P62891 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RPL39P62891 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC14.84□□□□□ -0.03
RPL39P62891 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
RPL39P62891 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC14.84□□□□□ -0.03
RPL39P62891 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC14.84□□□□□ -0.03
RPL39P62891 MTDHP2-201ENST00000601468 714 ntBASIC14.84□□□□□ -0.03
RPL39P62891 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RPL39P62891 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RPL39P62891 ADM-207ENST00000530439 1839 ntTSL 2 BASIC14.84□□□□□ -0.03
RPL39P62891 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC14.84□□□□□ -0.03
RPL39P62891 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC14.84□□□□□ -0.03
RPL39P62891 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC14.84□□□□□ -0.03
RPL39P62891 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
RPL39P62891 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
RPL39P62891 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
RPL39P62891 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC14.83□□□□□ -0.03
RPL39P62891 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC14.83□□□□□ -0.03
RPL39P62891 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
RPL39P62891 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
RPL39P62891 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
RPL39P62891 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
RPL39P62891 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
RPL39P62891 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
RPL39P62891 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC14.83□□□□□ -0.04
RPL39P62891 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC14.83□□□□□ -0.04
RPL39P62891 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
RPL39P62891 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms