Protein–RNA interactions for Protein: P46779

RPL28, 60S ribosomal protein L28, humanhuman

Known RBP Predictions only

Length 137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28P46779 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
RPL28P46779 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC13.86□□□□□ -0.19
RPL28P46779 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
RPL28P46779 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC13.85□□□□□ -0.19
RPL28P46779 AP005212.1-201ENST00000581547 1997 ntBASIC13.85□□□□□ -0.19
RPL28P46779 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
RPL28P46779 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RPL28P46779 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC13.85□□□□□ -0.19
RPL28P46779 AL020996.1-203ENST00000536896 2307 ntBASIC13.85□□□□□ -0.19
RPL28P46779 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RPL28P46779 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RPL28P46779 HES6-204ENST00000409182 863 ntTSL 2 BASIC13.85□□□□□ -0.19
RPL28P46779 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC13.85□□□□□ -0.19
RPL28P46779 EXOG-217ENST00000630638 197 ntTSL 5 BASIC13.85□□□□□ -0.19
RPL28P46779 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
RPL28P46779 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
RPL28P46779 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RPL28P46779 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RPL28P46779 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC13.85□□□□□ -0.19
RPL28P46779 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC13.84□□□□□ -0.19
RPL28P46779 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC13.84□□□□□ -0.19
RPL28P46779 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RPL28P46779 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RPL28P46779 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
RPL28P46779 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RPL28P46779 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC13.84□□□□□ -0.19
RPL28P46779 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RPL28P46779 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RPL28P46779 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC13.84□□□□□ -0.19
RPL28P46779 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC13.84□□□□□ -0.19
RPL28P46779 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RPL28P46779 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC13.84□□□□□ -0.19
RPL28P46779 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC13.84□□□□□ -0.19
RPL28P46779 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RPL28P46779 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC13.84□□□□□ -0.19
RPL28P46779 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RPL28P46779 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RPL28P46779 MFF-203ENST00000349901 1716 ntTSL 2 BASIC13.84□□□□□ -0.19
RPL28P46779 LINC01529-204ENST00000636474 1715 ntBASIC13.84□□□□□ -0.19
RPL28P46779 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC13.84□□□□□ -0.19
RPL28P46779 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC13.84□□□□□ -0.19
RPL28P46779 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
RPL28P46779 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
RPL28P46779 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC13.83□□□□□ -0.2
RPL28P46779 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RPL28P46779 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
RPL28P46779 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC13.83□□□□□ -0.2
RPL28P46779 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RPL28P46779 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
RPL28P46779 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC13.83□□□□□ -0.2
RPL28P46779 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RPL28P46779 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RPL28P46779 TFPT-201ENST00000391757 774 ntTSL 5 BASIC13.83□□□□□ -0.2
RPL28P46779 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
RPL28P46779 TRIR-205ENST00000592273 783 ntTSL 3 BASIC13.83□□□□□ -0.2
RPL28P46779 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
RPL28P46779 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RPL28P46779 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC13.83□□□□□ -0.2
RPL28P46779 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC13.83□□□□□ -0.2
RPL28P46779 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RPL28P46779 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
RPL28P46779 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC13.83□□□□□ -0.2
RPL28P46779 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
RPL28P46779 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC13.83□□□□□ -0.2
RPL28P46779 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
RPL28P46779 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC13.83□□□□□ -0.2
RPL28P46779 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RPL28P46779 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RPL28P46779 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RPL28P46779 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RPL28P46779 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC13.82□□□□□ -0.2
RPL28P46779 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC13.82□□□□□ -0.2
RPL28P46779 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RPL28P46779 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
RPL28P46779 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RPL28P46779 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
RPL28P46779 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RPL28P46779 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC13.82□□□□□ -0.2
RPL28P46779 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
RPL28P46779 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RPL28P46779 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RPL28P46779 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RPL28P46779 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC13.82□□□□□ -0.2
RPL28P46779 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC13.82□□□□□ -0.2
RPL28P46779 AL049796.1-201ENST00000565336 1766 ntBASIC13.82□□□□□ -0.2
RPL28P46779 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RPL28P46779 CD72-202ENST00000378430 585 ntTSL 3 BASIC13.82□□□□□ -0.2
RPL28P46779 KRT16P3-201ENST00000439127 1283 ntBASIC13.82□□□□□ -0.2
RPL28P46779 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
RPL28P46779 OR2A1-AS1-204ENST00000470435 602 ntBASIC13.82□□□□□ -0.2
RPL28P46779 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC13.82□□□□□ -0.2
RPL28P46779 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC13.82□□□□□ -0.2
RPL28P46779 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC13.82□□□□□ -0.2
RPL28P46779 AC009086.3-201ENST00000623486 1008 ntBASIC13.82□□□□□ -0.2
RPL28P46779 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
RPL28P46779 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RPL28P46779 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC13.82□□□□□ -0.2
RPL28P46779 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC13.82□□□□□ -0.2
RPL28P46779 AFG3L1P-217ENST00000557444 2447 ntBASIC13.82□□□□□ -0.2
RPL28P46779 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms