Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
TPM1P09493 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.3
TPM1P09493 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC23.14■■□□□ 1.3
TPM1P09493 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC23.14■■□□□ 1.3
TPM1P09493 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
TPM1P09493 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
TPM1P09493 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
TPM1P09493 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
TPM1P09493 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
TPM1P09493 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
TPM1P09493 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
TPM1P09493 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC23.14■■□□□ 1.29
TPM1P09493 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
TPM1P09493 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC23.14■■□□□ 1.29
TPM1P09493 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
TPM1P09493 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
TPM1P09493 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
TPM1P09493 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
TPM1P09493 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
TPM1P09493 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
TPM1P09493 MIR3181-201ENST00000578512 73 ntBASIC23.13■■□□□ 1.29
TPM1P09493 AC092171.4-201ENST00000609130 632 ntBASIC23.13■■□□□ 1.29
TPM1P09493 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
TPM1P09493 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
TPM1P09493 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
TPM1P09493 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC23.13■■□□□ 1.29
TPM1P09493 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
TPM1P09493 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
TPM1P09493 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC23.13■■□□□ 1.29
TPM1P09493 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC23.13■■□□□ 1.29
TPM1P09493 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC23.12■■□□□ 1.29
TPM1P09493 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
TPM1P09493 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
TPM1P09493 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
TPM1P09493 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
TPM1P09493 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
TPM1P09493 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
TPM1P09493 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC23.12■■□□□ 1.29
TPM1P09493 KRT16P3-201ENST00000439127 1283 ntBASIC23.12■■□□□ 1.29
TPM1P09493 RARRES2P1-201ENST00000474487 481 ntBASIC23.12■■□□□ 1.29
TPM1P09493 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
TPM1P09493 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
TPM1P09493 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC23.12■■□□□ 1.29
TPM1P09493 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
TPM1P09493 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
TPM1P09493 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC23.12■■□□□ 1.29
TPM1P09493 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
TPM1P09493 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
TPM1P09493 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
TPM1P09493 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
TPM1P09493 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
TPM1P09493 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
TPM1P09493 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC23.11■■□□□ 1.29
TPM1P09493 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC23.11■■□□□ 1.29
TPM1P09493 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC23.11■■□□□ 1.29
TPM1P09493 AL356740.2-201ENST00000601559 647 ntBASIC23.11■■□□□ 1.29
TPM1P09493 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
TPM1P09493 GATM-206ENST00000558336 1522 ntTSL 2 BASIC23.11■■□□□ 1.29
TPM1P09493 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
TPM1P09493 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
TPM1P09493 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
TPM1P09493 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC23.11■■□□□ 1.29
TPM1P09493 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
TPM1P09493 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
TPM1P09493 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
TPM1P09493 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC23.1■■□□□ 1.29
TPM1P09493 CREM-229ENST00000474362 1030 ntTSL 2 BASIC23.1■■□□□ 1.29
TPM1P09493 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC23.1■■□□□ 1.29
TPM1P09493 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
TPM1P09493 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
TPM1P09493 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC23.1■■□□□ 1.29
TPM1P09493 STX6-204ENST00000542060 4809 ntTSL 2 BASIC23.1■■□□□ 1.29
TPM1P09493 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
TPM1P09493 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
TPM1P09493 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
TPM1P09493 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
TPM1P09493 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
TPM1P09493 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
TPM1P09493 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
TPM1P09493 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
TPM1P09493 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
TPM1P09493 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
TPM1P09493 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
TPM1P09493 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
TPM1P09493 RNF165-205ENST00000588679 2904 ntBASIC23.09■■□□□ 1.29
TPM1P09493 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
TPM1P09493 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
TPM1P09493 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
TPM1P09493 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
TPM1P09493 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
TPM1P09493 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC23.09■■□□□ 1.29
TPM1P09493 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
TPM1P09493 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
TPM1P09493 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
TPM1P09493 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
TPM1P09493 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
TPM1P09493 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC23.08■■□□□ 1.29
TPM1P09493 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC23.08■■□□□ 1.29
TPM1P09493 AP004607.7-201ENST00000527152 1677 ntBASIC23.08■■□□□ 1.29
TPM1P09493 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms