Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SGCEO43556 Z98882.1-201ENST00000622160 2253 ntBASIC18.57■□□□□ 0.56
SGCEO43556 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SGCEO43556 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC18.57■□□□□ 0.56
SGCEO43556 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC18.57■□□□□ 0.56
SGCEO43556 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC18.57■□□□□ 0.56
SGCEO43556 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC18.57■□□□□ 0.56
SGCEO43556 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SGCEO43556 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SGCEO43556 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC18.57■□□□□ 0.56
SGCEO43556 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC18.57■□□□□ 0.56
SGCEO43556 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.57■□□□□ 0.56
SGCEO43556 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC18.57■□□□□ 0.56
SGCEO43556 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SGCEO43556 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
SGCEO43556 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SGCEO43556 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SGCEO43556 MFF-203ENST00000349901 1716 ntTSL 2 BASIC18.57■□□□□ 0.56
SGCEO43556 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SGCEO43556 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SGCEO43556 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
SGCEO43556 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
SGCEO43556 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SGCEO43556 AC055733.4-201ENST00000638462 1354 ntBASIC18.56■□□□□ 0.56
SGCEO43556 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
SGCEO43556 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC18.56■□□□□ 0.56
SGCEO43556 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
SGCEO43556 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SGCEO43556 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SGCEO43556 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SGCEO43556 NT5C3AP1-201ENST00000394500 1012 ntBASIC18.56■□□□□ 0.56
SGCEO43556 FXN-202ENST00000396364 980 ntTSL 5 BASIC18.56■□□□□ 0.56
SGCEO43556 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SGCEO43556 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SGCEO43556 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SGCEO43556 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SGCEO43556 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SGCEO43556 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SGCEO43556 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SGCEO43556 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC18.56■□□□□ 0.56
SGCEO43556 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
SGCEO43556 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.55■□□□□ 0.56
SGCEO43556 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SGCEO43556 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC18.55■□□□□ 0.56
SGCEO43556 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
SGCEO43556 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SGCEO43556 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.55■□□□□ 0.56
SGCEO43556 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SGCEO43556 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC18.55■□□□□ 0.56
SGCEO43556 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
SGCEO43556 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC18.55■□□□□ 0.56
SGCEO43556 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SGCEO43556 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SGCEO43556 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC18.55■□□□□ 0.56
SGCEO43556 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SGCEO43556 MIR6084-201ENST00000622012 110 ntBASIC18.55■□□□□ 0.56
SGCEO43556 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SGCEO43556 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
SGCEO43556 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
SGCEO43556 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC18.55■□□□□ 0.56
SGCEO43556 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SGCEO43556 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC18.55■□□□□ 0.56
SGCEO43556 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC18.55■□□□□ 0.56
SGCEO43556 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SGCEO43556 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC18.54■□□□□ 0.56
SGCEO43556 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SGCEO43556 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC18.54■□□□□ 0.56
SGCEO43556 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SGCEO43556 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC18.54■□□□□ 0.56
SGCEO43556 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.54■□□□□ 0.56
SGCEO43556 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SGCEO43556 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SGCEO43556 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC18.54■□□□□ 0.56
SGCEO43556 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC18.54■□□□□ 0.56
SGCEO43556 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SGCEO43556 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
SGCEO43556 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.54■□□□□ 0.56
SGCEO43556 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SGCEO43556 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC18.54■□□□□ 0.56
SGCEO43556 AC026310.3-201ENST00000625186 2373 ntBASIC18.54■□□□□ 0.56
SGCEO43556 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC18.54■□□□□ 0.56
SGCEO43556 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SGCEO43556 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SGCEO43556 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC18.54■□□□□ 0.56
SGCEO43556 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC18.53■□□□□ 0.56
SGCEO43556 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SGCEO43556 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC18.53■□□□□ 0.56
SGCEO43556 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.53■□□□□ 0.56
SGCEO43556 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SGCEO43556 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
SGCEO43556 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC18.53■□□□□ 0.56
SGCEO43556 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SGCEO43556 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SGCEO43556 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SGCEO43556 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SGCEO43556 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SGCEO43556 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SGCEO43556 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
SGCEO43556 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SGCEO43556 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms