Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
PDLIM1O00151 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
PDLIM1O00151 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PDLIM1O00151 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
PDLIM1O00151 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PDLIM1O00151 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20■□□□□ 0.79
PDLIM1O00151 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PDLIM1O00151 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20■□□□□ 0.79
PDLIM1O00151 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
PDLIM1O00151 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.99■□□□□ 0.79
PDLIM1O00151 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PDLIM1O00151 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PDLIM1O00151 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PDLIM1O00151 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC19.99■□□□□ 0.79
PDLIM1O00151 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
PDLIM1O00151 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PDLIM1O00151 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PDLIM1O00151 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PDLIM1O00151 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PDLIM1O00151 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC19.99■□□□□ 0.79
PDLIM1O00151 DUX4L4-201ENST00000566884 1269 ntBASIC19.99■□□□□ 0.79
PDLIM1O00151 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PDLIM1O00151 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.99■□□□□ 0.79
PDLIM1O00151 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
PDLIM1O00151 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PDLIM1O00151 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PDLIM1O00151 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
PDLIM1O00151 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.98■□□□□ 0.79
PDLIM1O00151 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
PDLIM1O00151 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PDLIM1O00151 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PDLIM1O00151 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.98■□□□□ 0.79
PDLIM1O00151 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PDLIM1O00151 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PDLIM1O00151 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PDLIM1O00151 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PDLIM1O00151 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.98■□□□□ 0.79
PDLIM1O00151 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PDLIM1O00151 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
PDLIM1O00151 AL158211.5-201ENST00000623583 2518 ntBASIC19.98■□□□□ 0.79
PDLIM1O00151 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.97■□□□□ 0.79
PDLIM1O00151 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
PDLIM1O00151 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
PDLIM1O00151 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.97■□□□□ 0.79
PDLIM1O00151 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PDLIM1O00151 MIR4466-201ENST00000606121 54 ntBASIC19.97■□□□□ 0.79
PDLIM1O00151 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PDLIM1O00151 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PDLIM1O00151 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PDLIM1O00151 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PDLIM1O00151 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PDLIM1O00151 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.97■□□□□ 0.79
PDLIM1O00151 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PDLIM1O00151 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
PDLIM1O00151 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
PDLIM1O00151 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.96■□□□□ 0.79
PDLIM1O00151 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PDLIM1O00151 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.96■□□□□ 0.79
PDLIM1O00151 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.96■□□□□ 0.79
PDLIM1O00151 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PDLIM1O00151 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.96■□□□□ 0.79
PDLIM1O00151 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PDLIM1O00151 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.96■□□□□ 0.79
PDLIM1O00151 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PDLIM1O00151 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.96■□□□□ 0.79
PDLIM1O00151 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PDLIM1O00151 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
PDLIM1O00151 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PDLIM1O00151 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.96■□□□□ 0.79
PDLIM1O00151 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
PDLIM1O00151 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PDLIM1O00151 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.95■□□□□ 0.78
PDLIM1O00151 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.95■□□□□ 0.78
PDLIM1O00151 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.95■□□□□ 0.78
PDLIM1O00151 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.95■□□□□ 0.78
PDLIM1O00151 AC087289.5-201ENST00000586076 3175 ntBASIC19.95■□□□□ 0.78
PDLIM1O00151 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
PDLIM1O00151 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
PDLIM1O00151 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PDLIM1O00151 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PDLIM1O00151 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.95■□□□□ 0.78
PDLIM1O00151 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
PDLIM1O00151 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
PDLIM1O00151 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.94■□□□□ 0.78
PDLIM1O00151 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.94■□□□□ 0.78
PDLIM1O00151 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
PDLIM1O00151 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PDLIM1O00151 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PDLIM1O00151 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PDLIM1O00151 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PDLIM1O00151 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PDLIM1O00151 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
PDLIM1O00151 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PDLIM1O00151 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PDLIM1O00151 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
PDLIM1O00151 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC19.94■□□□□ 0.78
PDLIM1O00151 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PDLIM1O00151 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC19.94■□□□□ 0.78
PDLIM1O00151 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
PDLIM1O00151 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms