Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 RBM39-210ENST00000425184 526 ntTSL 33.12□□□□□ -1.917e-7■□□□□ 9.5
SF3B1O75533 NAP1L1-224ENST00000552056 1981 ntTSL 53.07□□□□□ -1.927e-7■□□□□ 9.5
SF3B1O75533 RBM39-211ENST00000426951 840 ntTSL 1 (best)2.89□□□□□ -1.957e-7■□□□□ 9.5
SF3B1O75533 RBM39-231ENST00000477334 949 ntTSL 22.89□□□□□ -1.957e-7■□□□□ 9.5
SF3B1O75533 RBM39-242ENST00000498280 444 ntTSL 31.7□□□□□ -2.147e-7■□□□□ 9.5
SF3B1O75533 RBM39-234ENST00000487604 370 ntTSL 31.15□□□□□ -2.227e-7■□□□□ 9.5
SF3B1O75533 SMC4-203ENST00000462668 4235 ntTSL 22.78□□□□□ -1.962e-7■□□□□ 9.5
SF3B1O75533 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC14.1□□□□□ -0.153e-9■□□□□ 9.5
SF3B1O75533 ACTR2-201ENST00000260641 3861 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.873e-9■□□□□ 9.5
SF3B1O75533 HEMGN-201ENST00000259456 2192 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.169e-10■□□□□ 9.4
SF3B1O75533 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.549e-10■□□□□ 9.4
SF3B1O75533 WSB1-216ENST00000584114 479 ntTSL 33.64□□□□□ -1.837e-12■□□□□ 9.3
SF3B1O75533 WSB1-212ENST00000583096 834 ntTSL 33.36□□□□□ -1.877e-12■□□□□ 9.3
SF3B1O75533 OAZ1-206ENST00000589739 657 ntTSL 219.22■□□□□ 0.675e-12■□□□□ 9.2
SF3B1O75533 SNORD2-201ENST00000459163 69 ntBASIC-0.5□□□□□ -2.498e-8■□□□□ 9.2
SF3B1O75533 MT-ND6-201ENST00000361681 525 ntAPPRIS P1 BASIC13.76□□□□□ -0.212e-75■□□□□ 9.1
SF3B1O75533 ALDOA-215ENST00000565355 538 ntTSL 516.96■□□□□ 0.31e-9■□□□□ 9.1
SF3B1O75533 SETD5-201ENST00000302463 4786 ntTSL 1 (best) BASIC10.23□□□□□ -0.773e-7■□□□□ 8.8
SF3B1O75533 SETD5-210ENST00000442373 900 ntTSL 59.56□□□□□ -0.883e-7■□□□□ 8.8
SF3B1O75533 SETD5-226ENST00000490791 667 ntTSL 37.11□□□□□ -1.273e-7■□□□□ 8.8
SF3B1O75533 NUP214-223ENST00000530843 189 ntTSL 52.84□□□□□ -1.962e-10■□□□□ 8.7
SF3B1O75533 HMGN1-217ENST00000489072 1014 ntTSL 327.37■■□□□ 1.974e-6■□□□□ 8.6
SF3B1O75533 HMGN1-207ENST00000436324 1045 ntTSL 220.03■□□□□ 0.84e-6■□□□□ 8.6
SF3B1O75533 HMGN1-219ENST00000491183 527 ntTSL 219.76■□□□□ 0.754e-6■□□□□ 8.6
SF3B1O75533 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC19.32■□□□□ 0.684e-6■□□□□ 8.6
SF3B1O75533 HMGN1-212ENST00000479586 841 ntTSL 219.32■□□□□ 0.684e-6■□□□□ 8.6
SF3B1O75533 HMGN1-206ENST00000431390 1552 ntTSL 319.27■□□□□ 0.684e-6■□□□□ 8.6
SF3B1O75533 HMGN1-209ENST00000463631 583 ntTSL 319.2■□□□□ 0.664e-6■□□□□ 8.6
SF3B1O75533 HMGN1-210ENST00000464078 508 ntTSL 519.2■□□□□ 0.664e-6■□□□□ 8.6
SF3B1O75533 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.644e-6■□□□□ 8.6
SF3B1O75533 HMGN1-214ENST00000482733 701 ntTSL 218.04■□□□□ 0.484e-6■□□□□ 8.6
SF3B1O75533 HMGN1-208ENST00000443046 823 ntTSL 316.01■□□□□ 0.154e-6■□□□□ 8.6
SF3B1O75533 HMGN1-211ENST00000471260 615 ntTSL 314.83□□□□□ -0.044e-6■□□□□ 8.6
SF3B1O75533 HMGN1-216ENST00000486741 4299 ntTSL 213.41□□□□□ -0.264e-6■□□□□ 8.6
SF3B1O75533 HMGN1-213ENST00000482192 793 ntTSL 313.02□□□□□ -0.334e-6■□□□□ 8.6
SF3B1O75533 HMGN1-220ENST00000492280 2707 ntTSL 512.67□□□□□ -0.384e-6■□□□□ 8.6
SF3B1O75533 HMGN1-215ENST00000485550 745 ntTSL 511.61□□□□□ -0.554e-6■□□□□ 8.6
SF3B1O75533 HMGN1-202ENST00000380747 709 ntTSL 3 BASIC10.04□□□□□ -0.84e-6■□□□□ 8.6
SF3B1O75533 HMGN1-201ENST00000288344 1303 ntTSL 29.94□□□□□ -0.824e-6■□□□□ 8.6
SF3B1O75533 HMGN1-205ENST00000419378 850 ntTSL 27.53□□□□□ -1.24e-6■□□□□ 8.6
SF3B1O75533 TFRC-215ENST00000491658 396 ntTSL 52.04□□□□□ -2.081e-7■□□□□ 8.6
SF3B1O75533 RPL9-210ENST00000511643 618 ntTSL 24.44□□□□□ -1.75e-6■□□□□ 8.6
SF3B1O75533 RPL7A-203ENST00000426651 1057 ntTSL 521.8■■□□□ 1.081e-10■□□□□ 8.4
SF3B1O75533 RPL7A-209ENST00000496554 947 ntTSL 219.72■□□□□ 0.751e-10■□□□□ 8.4
SF3B1O75533 RPL7A-206ENST00000485706 743 ntTSL 213.09□□□□□ -0.311e-10■□□□□ 8.4
SF3B1O75533 SNORD24-201ENST00000383884 75 ntBASIC0.25□□□□□ -2.371e-10■□□□□ 8.4
SF3B1O75533 BHLHE40-203ENST00000467610 1366 ntTSL 219.17■□□□□ 0.665e-6■□□□□ 8.4
SF3B1O75533 BHLHE40-201ENST00000256495 3473 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.365e-6■□□□□ 8.4
SF3B1O75533 BHLHE40-202ENST00000460806 396 ntTSL 27.53□□□□□ -1.25e-6■□□□□ 8.4
SF3B1O75533 MARCH6-213ENST00000514961 703 ntTSL 57.17□□□□□ -1.261e-8■□□□□ 8.3
SF3B1O75533 IARS-203ENST00000395554 1103 ntTSL 514.58□□□□□ -0.086e-6■□□□□ 8.3
SF3B1O75533 DKC1-212ENST00000492372 406 ntTSL 29.94□□□□□ -0.822e-6■□□□□ 8.1
SF3B1O75533 MATR3-211ENST00000505625 7306 ntTSL 1 (best)5.29□□□□□ -1.568e-6■□□□□ 8
SF3B1O75533 MATR3-202ENST00000502422 2250 ntTSL 1 (best)4.78□□□□□ -1.648e-6■□□□□ 8
SF3B1O75533 MATR3-226ENST00000515833 1001 ntTSL 53.79□□□□□ -1.88e-6■□□□□ 8
SF3B1O75533 MATR3-217ENST00000511333 558 ntTSL 51.69□□□□□ -2.148e-6■□□□□ 8
Retrieved 56 of 46,956 protein–RNA pairs in 1187.9 ms