RNA–Protein interactions for RNA: ENST00000462668.5

SMC4-203, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 4,235 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-203ENST00000462668 CHIC1Q5VXU3 224 aa10.52□□□□□ -0.73
SMC4-203ENST00000462668 AEBP2Q6ZN18 517 aaPredicted RBP10.23□□□□□ -0.77
SMC4-203ENST00000462668 PHF23Q9BUL5 403 aaPredicted RBP9.36□□□□□ -0.91
SMC4-203ENST00000462668 PLPPR3Q6T4P5 718 aa8.68□□□□□ -1.02
SMC4-203ENST00000462668 SENP3Q9H4L4 574 aaPredicted RBP8.47□□□□□ -1.05
SMC4-203ENST00000462668 KCNA4P22459 653 aa8.16□□□□□ -1.1
SMC4-203ENST00000462668 ADRA2BP18089 450 aa8.1□□□□□ -1.11
SMC4-203ENST00000462668 EHMT2Q96KQ7 1210 aa8.03□□□□□ -1.12
SMC4-203ENST00000462668 CSRNP3Q8WYN3 585 aa7.99□□□□□ -1.13
SMC4-203ENST00000462668 PPP6R1Q9UPN7 881 aa7.98□□□□□ -1.13
SMC4-203ENST00000462668 FOXD1Q16676 465 aa7.83□□□□□ -1.16
SMC4-203ENST00000462668 SLC4A1APQ9BWU0 796 aaKnown RBP7.79□□□□□ -1.16
SMC4-203ENST00000462668 DNAJC5BQ9UF47 199 aa7.72□□□□□ -1.17
SMC4-203ENST00000462668 PPP4R3CPQ6ZMV5 832 aa7.71□□□□□ -1.18
SMC4-203ENST00000462668 ZBTB22O15209 634 aa7.65□□□□□ -1.18
SMC4-203ENST00000462668 NPM3O75607 178 aaKnown RBP7.61□□□□□ -1.19
SMC4-203ENST00000462668 NCBP3Q53F19 620 aaKnown RBP7.6□□□□□ -1.19
SMC4-203ENST00000462668 SLC24A1O60721 1099 aa7.57□□□□□ -1.2
SMC4-203ENST00000462668 AMER1Q5JTC6 1135 aaPredicted RBP7.46□□□□□ -1.22
SMC4-203ENST00000462668 RTN4Q9NQC3 1192 aaKnown RBP7.42□□□□□ -1.22
SMC4-203ENST00000462668 CNKSR2Q8WXI2 1034 aa7.42□□□□□ -1.22
SMC4-203ENST00000462668 PIAS4Q8N2W9 510 aaPredicted RBP7.36□□□□□ -1.23
SMC4-203ENST00000462668 FOXD4L1Q9NU39 408 aa7.36□□□□□ -1.23
SMC4-203ENST00000462668 RNF216Q9NWF9 866 aaPredicted RBP7.2□□□□□ -1.26
SMC4-203ENST00000462668 ATXN8OSP0DMR3 200 aa7.2□□□□□ -1.26
SMC4-203ENST00000462668 SCAF1Q9H7N4 1312 aaKnown RBP7.17□□□□□ -1.26
SMC4-203ENST00000462668 SLC4A2P04920 1241 aa7.12□□□□□ -1.27
SMC4-203ENST00000462668 HOXD11P31277 338 aaPredicted RBP7.09□□□□□ -1.27
SMC4-203ENST00000462668 MAPK8IP2Q13387 824 aaPredicted RBP7.01□□□□□ -1.29
SMC4-203ENST00000462668 FKBP8Q14318 412 aa6.99□□□□□ -1.29
SMC4-203ENST00000462668 MYCNP04198 464 aaPredicted RBP6.99□□□□□ -1.29
SMC4-203ENST00000462668 MSH5O43196 834 aa6.98□□□□□ -1.29
SMC4-203ENST00000462668 DMRT2Q9Y5R5 561 aa6.96□□□□□ -1.3
SMC4-203ENST00000462668 PROM2Q8N271 834 aa6.87□□□□□ -1.31
SMC4-203ENST00000462668 PLCB2Q00722 1185 aa6.86□□□□□ -1.31
SMC4-203ENST00000462668 ATF5Q9Y2D1 282 aaPredicted RBP6.81□□□□□ -1.32
SMC4-203ENST00000462668 VSIG10Q8N0Z9 540 aa6.71□□□□□ -1.34
SMC4-203ENST00000462668 BCANQ96GW7 911 aa6.68□□□□□ -1.34
SMC4-203ENST00000462668 TAOK2Q9UL54 1235 aa6.67□□□□□ -1.34
SMC4-203ENST00000462668 FBXO3Q9UK99 471 aa6.65□□□□□ -1.34
SMC4-203ENST00000462668 PKD2Q13563 968 aa6.64□□□□□ -1.35
SMC4-203ENST00000462668 DNAJC5Q9H3Z4 198 aa6.62□□□□□ -1.35
SMC4-203ENST00000462668 SAMD1Q6SPF0 538 aaPredicted RBP6.62□□□□□ -1.35
SMC4-203ENST00000462668 PRKCSHP14314 528 aaPredicted RBP6.61□□□□□ -1.35
SMC4-203ENST00000462668 IFNLR1Q8IU57 520 aaPredicted RBP6.61□□□□□ -1.35
SMC4-203ENST00000462668 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.6□□□□□ -1.35
SMC4-203ENST00000462668 HNRNPUL2Q1KMD3 747 aaKnown RBP6.6□□□□□ -1.35
SMC4-203ENST00000462668 U3KPZ7 1027 aaPredicted RBP6.6□□□□□ -1.35
SMC4-203ENST00000462668 MKRN4PQ13434 485 aaPredicted RBP6.59□□□□□ -1.35
SMC4-203ENST00000462668 VASPP50552 380 aaPredicted RBP6.58□□□□□ -1.36
SMC4-203ENST00000462668 KDM2AQ9Y2K7 1162 aa6.58□□□□□ -1.36
SMC4-203ENST00000462668 ZNF219Q9P2Y4 722 aaPredicted RBP6.56□□□□□ -1.36
SMC4-203ENST00000462668 HAP1P54257 671 aaPredicted RBP6.54□□□□□ -1.36
SMC4-203ENST00000462668 BBXQ8WY36 941 aaPredicted RBP6.54□□□□□ -1.36
SMC4-203ENST00000462668 SPDYE4A6NLX3 237 aa6.53□□□□□ -1.36
SMC4-203ENST00000462668 POTEDQ86YR6 584 aa6.53□□□□□ -1.36
SMC4-203ENST00000462668 NPM1P06748 294 aaKnown RBP eCLIP6.5□□□□□ -1.37
SMC4-203ENST00000462668 FBLN2P98095 1184 aa6.46□□□□□ -1.38
SMC4-203ENST00000462668 TPRNQ4KMQ1 711 aa6.44□□□□□ -1.38
SMC4-203ENST00000462668 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.4□□□□□ -1.392e-7■□□□□ 10.7
SMC4-203ENST00000462668 APLP2Q06481 763 aa6.37□□□□□ -1.39
SMC4-203ENST00000462668 TIMELESSQ9UNS1 1208 aa6.36□□□□□ -1.39
SMC4-203ENST00000462668 SPOCK2Q92563 424 aa6.35□□□□□ -1.39
SMC4-203ENST00000462668 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.33□□□□□ -1.4
SMC4-203ENST00000462668 ARXQ96QS3 562 aa6.33□□□□□ -1.4
SMC4-203ENST00000462668 RGL2O15211 777 aa6.32□□□□□ -1.4
SMC4-203ENST00000462668 TSHZ2Q9NRE2 1034 aa6.31□□□□□ -1.4
SMC4-203ENST00000462668 PAXIP1Q6ZW49 1069 aaPredicted RBP6.31□□□□□ -1.4
SMC4-203ENST00000462668 DAXXQ9UER7 740 aaPredicted RBP6.29□□□□□ -1.4
SMC4-203ENST00000462668 ECM2O94769 699 aaPredicted RBP6.28□□□□□ -1.4
SMC4-203ENST00000462668 SPRYD3Q8NCJ5 442 aa6.28□□□□□ -1.4
SMC4-203ENST00000462668 HS6ST3Q8IZP7 471 aa6.26□□□□□ -1.41
SMC4-203ENST00000462668 STAG3Q9UJ98 1225 aa6.26□□□□□ -1.41
SMC4-203ENST00000462668 ERICH6Q7L0X2 663 aa6.26□□□□□ -1.41
SMC4-203ENST00000462668 TMEM132AQ24JP5 1023 aa6.24□□□□□ -1.41
SMC4-203ENST00000462668 GTF3C3Q9Y5Q9 886 aa6.24□□□□□ -1.41
SMC4-203ENST00000462668 SSUH2Q9Y2M2 353 aa6.23□□□□□ -1.41
SMC4-203ENST00000462668 CFAP44Q96MT7 982 aa6.21□□□□□ -1.41
SMC4-203ENST00000462668 TRIM41Q8WV44 630 aa6.2□□□□□ -1.42
SMC4-203ENST00000462668 TULP1O00294 542 aaPredicted RBP6.19□□□□□ -1.42
SMC4-203ENST00000462668 DCAF8L2P0C7V8 631 aa6.19□□□□□ -1.42
SMC4-203ENST00000462668 ZBTB12Q9Y330 459 aaPredicted RBP6.19□□□□□ -1.42
SMC4-203ENST00000462668 NKX1-1Q15270 411 aaPredicted RBP6.17□□□□□ -1.42
SMC4-203ENST00000462668 POLA2Q14181 598 aa6.17□□□□□ -1.42
SMC4-203ENST00000462668 RNF25Q96BH1 459 aaPredicted RBP6.16□□□□□ -1.42
SMC4-203ENST00000462668 SGIP1Q9BQI5 828 aa6.16□□□□□ -1.42
SMC4-203ENST00000462668 GTPBP6O43824 516 aaPredicted RBP6.15□□□□□ -1.42
SMC4-203ENST00000462668 SPINK5Q9NQ38 1064 aaPredicted RBP6.14□□□□□ -1.43
SMC4-203ENST00000462668 DCAF8L1A6NGE4 600 aa6.13□□□□□ -1.43
SMC4-203ENST00000462668 RNF39Q9H2S5 420 aa6.11□□□□□ -1.43
SMC4-203ENST00000462668 NBR1Q14596 966 aa6.11□□□□□ -1.43
SMC4-203ENST00000462668 CHGAP10645 457 aaKnown RBP6.09□□□□□ -1.43
SMC4-203ENST00000462668 CHRM1P11229 460 aaPredicted RBP6.08□□□□□ -1.44
SMC4-203ENST00000462668 SPDYE2BA6NHP3 402 aa6.08□□□□□ -1.44
SMC4-203ENST00000462668 SPDYE6P0CI01 402 aa6.08□□□□□ -1.44
SMC4-203ENST00000462668 SPDYE2Q495Y8 402 aa6.08□□□□□ -1.44
SMC4-203ENST00000462668 NUBP1P53384 320 aa6.07□□□□□ -1.44
SMC4-203ENST00000462668 KLHL34Q8N239 644 aa6.07□□□□□ -1.44
SMC4-203ENST00000462668 HOMEZQ8IX15 550 aa6.06□□□□□ -1.44
SMC4-203ENST00000462668 ZBTB47Q9UFB7 747 aaPredicted RBP6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms