RNA–Protein interactions for RNA: ENST00000498280.1

RBM39-242, Transcript of RNA binding motif protein 39, humanhuman

TSL 3

Gene RBM39, Length 444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-242ENST00000498280 AEBP2Q6ZN18 517 aaPredicted RBP20.09■□□□□ 0.81
RBM39-242ENST00000498280 CHIC1Q5VXU3 224 aa18.7■□□□□ 0.58
RBM39-242ENST00000498280 SENP3Q9H4L4 574 aaPredicted RBP17.14■□□□□ 0.33
RBM39-242ENST00000498280 PHF23Q9BUL5 403 aaPredicted RBP16.89■□□□□ 0.29
RBM39-242ENST00000498280 FOXD1Q16676 465 aa16.07■□□□□ 0.16
RBM39-242ENST00000498280 POTEDQ86YR6 584 aa15.5■□□□□ 0.07
RBM39-242ENST00000498280 MSH5O43196 834 aa15.13■□□□□ 0.01
RBM39-242ENST00000498280 PIAS4Q8N2W9 510 aaPredicted RBP14.92□□□□□ -0.02
RBM39-242ENST00000498280 PPP6R1Q9UPN7 881 aa14.74□□□□□ -0.05
RBM39-242ENST00000498280 PLPPR3Q6T4P5 718 aa14.72□□□□□ -0.05
RBM39-242ENST00000498280 ADRA2BP18089 450 aa14.68□□□□□ -0.06
RBM39-242ENST00000498280 MAPK8IP2Q13387 824 aaPredicted RBP13.61□□□□□ -0.23
RBM39-242ENST00000498280 DMRT2Q9Y5R5 561 aa13.54□□□□□ -0.24
RBM39-242ENST00000498280 SCAF1Q9H7N4 1312 aaKnown RBP13.34□□□□□ -0.27
RBM39-242ENST00000498280 CACNB1Q02641 598 aaPredicted RBP13.27□□□□□ -0.29
RBM39-242ENST00000498280 DCAF8L1A6NGE4 600 aa13.07□□□□□ -0.32
RBM39-242ENST00000498280 RNF39Q9H2S5 420 aa12.9□□□□□ -0.34
RBM39-242ENST00000498280 HOXD11P31277 338 aaPredicted RBP12.87□□□□□ -0.35
RBM39-242ENST00000498280 PPP4R3CPQ6ZMV5 832 aa12.87□□□□□ -0.35
RBM39-242ENST00000498280 CNKSR2Q8WXI2 1034 aa12.68□□□□□ -0.38
RBM39-242ENST00000498280 RNF216Q9NWF9 866 aaPredicted RBP12.67□□□□□ -0.38
RBM39-242ENST00000498280 C1QBPQ07021 282 aaKnown RBP12.66□□□□□ -0.38
RBM39-242ENST00000498280 DNAJC5BQ9UF47 199 aa12.43□□□□□ -0.42
RBM39-242ENST00000498280 NCBP3Q53F19 620 aaKnown RBP12.35□□□□□ -0.43
RBM39-242ENST00000498280 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.3□□□□□ -0.44
RBM39-242ENST00000498280 NPM3O75607 178 aaKnown RBP12.09□□□□□ -0.47
RBM39-242ENST00000498280 POTEHQ6S545 545 aa12.05□□□□□ -0.48
RBM39-242ENST00000498280 U3KPZ7 1027 aaPredicted RBP12.01□□□□□ -0.49
RBM39-242ENST00000498280 SPINK5Q9NQ38 1064 aaPredicted RBP11.98□□□□□ -0.49
RBM39-242ENST00000498280 CAPN15O75808 1086 aa11.96□□□□□ -0.49
RBM39-242ENST00000498280 DSG3P32926 999 aa11.96□□□□□ -0.49
RBM39-242ENST00000498280 KCNA4P22459 653 aa11.71□□□□□ -0.53
RBM39-242ENST00000498280 ABCB7O75027 752 aa11.68□□□□□ -0.54
RBM39-242ENST00000498280 TRHP20396 242 aaPredicted RBP11.68□□□□□ -0.54
RBM39-242ENST00000498280 SLC4A2P04920 1241 aa11.65□□□□□ -0.54
RBM39-242ENST00000498280 APLP2Q06481 763 aa11.64□□□□□ -0.55
RBM39-242ENST00000498280 ZNF219Q9P2Y4 722 aaPredicted RBP11.57□□□□□ -0.56
RBM39-242ENST00000498280 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.55□□□□□ -0.56
RBM39-242ENST00000498280 HNRNPUL2Q1KMD3 747 aaKnown RBP11.55□□□□□ -0.56
RBM39-242ENST00000498280 SAMD1Q6SPF0 538 aaPredicted RBP11.45□□□□□ -0.58
RBM39-242ENST00000498280 RBM42Q9BTD8 480 aaKnown RBP11.38□□□□□ -0.59
RBM39-242ENST00000498280 CHRDL2Q6WN34 429 aa11.33□□□□□ -0.6
RBM39-242ENST00000498280 MYCNP04198 464 aaPredicted RBP11.26□□□□□ -0.61
RBM39-242ENST00000498280 POLA2Q14181 598 aa11.26□□□□□ -0.61
RBM39-242ENST00000498280 SP7Q8TDD2 431 aaPredicted RBP11.11□□□□□ -0.63
RBM39-242ENST00000498280 AKT1S1Q96B36 256 aa11.04□□□□□ -0.64
RBM39-242ENST00000498280 SLC4A1APQ9BWU0 796 aaKnown RBP11.03□□□□□ -0.64
RBM39-242ENST00000498280 FOXD4L1Q9NU39 408 aa11.03□□□□□ -0.64
RBM39-242ENST00000498280 ZBTB12Q9Y330 459 aaPredicted RBP11.01□□□□□ -0.65
RBM39-242ENST00000498280 PIP4P2Q8N4L2 257 aa10.99□□□□□ -0.65
RBM39-242ENST00000498280 ATF5Q9Y2D1 282 aaPredicted RBP10.99□□□□□ -0.65
RBM39-242ENST00000498280 REM2Q8IYK8 340 aaPredicted RBP10.98□□□□□ -0.65
RBM39-242ENST00000498280 OSCARQ8IYS5 282 aa10.94□□□□□ -0.66
RBM39-242ENST00000498280 HAX1O00165 279 aa10.9□□□□□ -0.66
RBM39-242ENST00000498280 PITPNM1O00562 1244 aa10.88□□□□□ -0.67
RBM39-242ENST00000498280 FXR2P51116 673 aaKnown RBP eCLIP10.83□□□□□ -0.68
RBM39-242ENST00000498280 ZBTB22O15209 634 aa10.81□□□□□ -0.68
RBM39-242ENST00000498280 EVX2Q03828 476 aa10.77□□□□□ -0.69
RBM39-242ENST00000498280 ATXN8OSP0DMR3 200 aa10.7□□□□□ -0.7
RBM39-242ENST00000498280 FBLN2P98095 1184 aa10.63□□□□□ -0.71
RBM39-242ENST00000498280 SPDYE2BA6NHP3 402 aa10.59□□□□□ -0.71
RBM39-242ENST00000498280 SPDYE6P0CI01 402 aa10.59□□□□□ -0.71
RBM39-242ENST00000498280 PRKAR2AP13861 404 aaKnown RBP10.59□□□□□ -0.71
RBM39-242ENST00000498280 SPDYE2Q495Y8 402 aa10.59□□□□□ -0.71
RBM39-242ENST00000498280 CLEC11AQ9Y240 323 aa10.56□□□□□ -0.72
RBM39-242ENST00000498280 C19orf67A6NJJ6 358 aa10.5□□□□□ -0.73
RBM39-242ENST00000498280 SPDYE1Q8NFV5 336 aaPredicted RBP10.5□□□□□ -0.73
RBM39-242ENST00000498280 GABBR2O75899 941 aa10.46□□□□□ -0.73
RBM39-242ENST00000498280 MKRN4PQ13434 485 aaPredicted RBP10.45□□□□□ -0.74
RBM39-242ENST00000498280 LHX8Q68G74 356 aa10.42□□□□□ -0.74
RBM39-242ENST00000498280 CHADLQ6NUI6 762 aa10.42□□□□□ -0.74
RBM39-242ENST00000498280 ZNF692Q9BU19 519 aaPredicted RBP10.42□□□□□ -0.74
RBM39-242ENST00000498280 SSUH2Q9Y2M2 353 aa10.41□□□□□ -0.74
RBM39-242ENST00000498280 CSRNP3Q8WYN3 585 aa10.3□□□□□ -0.76
RBM39-242ENST00000498280 PRR29P0C7W0 189 aa10.29□□□□□ -0.76
RBM39-242ENST00000498280 PABPN1Q86U42 306 aaKnown RBP eCLIP10.27□□□□□ -0.77
RBM39-242ENST00000498280 POTEIP0CG38 1075 aa10.26□□□□□ -0.77
RBM39-242ENST00000498280 CD44P16070 742 aaKnown RBP10.23□□□□□ -0.77
RBM39-242ENST00000498280 EHMT2Q96KQ7 1210 aa10.18□□□□□ -0.78
RBM39-242ENST00000498280 FARP1Q9Y4F1 1045 aaPredicted RBP10.18□□□□□ -0.78
RBM39-242ENST00000498280 PLSCR2Q9NRY7 297 aa10.13□□□□□ -0.79
RBM39-242ENST00000498280 DCBLD2Q96PD2 775 aa10.09□□□□□ -0.79
RBM39-242ENST00000498280 CLCN6P51797 869 aa10.04□□□□□ -0.8
RBM39-242ENST00000498280 ZNF579Q8NAF0 562 aaKnown RBP10.03□□□□□ -0.8
RBM39-242ENST00000498280 ZRANB1Q9UGI0 708 aa10.02□□□□□ -0.81
RBM39-242ENST00000498280 GALR2O43603 387 aaPredicted RBP9.97□□□□□ -0.81
RBM39-242ENST00000498280 STAG3Q9UJ98 1225 aa9.97□□□□□ -0.81
RBM39-242ENST00000498280 CREBZFQ9NS37 354 aa9.96□□□□□ -0.82
RBM39-242ENST00000498280 OTUD5Q96G74 571 aa9.94□□□□□ -0.82
RBM39-242ENST00000498280 POTEB2H3BUK9 544 aa9.92□□□□□ -0.82
RBM39-242ENST00000498280 PHF12Q96QT6 1004 aa9.89□□□□□ -0.83
RBM39-242ENST00000498280 SPDYE4A6NLX3 237 aa9.88□□□□□ -0.83
RBM39-242ENST00000498280 PAK3O75914 559 aaPredicted RBP9.87□□□□□ -0.83
RBM39-242ENST00000498280 POTEMA6NI47 508 aa9.84□□□□□ -0.83
RBM39-242ENST00000498280 PELP1Q8IZL8 1130 aaKnown RBP9.83□□□□□ -0.84
RBM39-242ENST00000498280 POTEGQ6S5H5 508 aa9.8□□□□□ -0.84
RBM39-242ENST00000498280 NPM1P06748 294 aaKnown RBP eCLIP9.79□□□□□ -0.84
RBM39-242ENST00000498280 MNX1P50219 401 aaPredicted RBP9.73□□□□□ -0.85
RBM39-242ENST00000498280 METRNQ9UJH8 293 aa9.73□□□□□ -0.85
RBM39-242ENST00000498280 POTEJP0CG39 1038 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms