Protein–RNA interactions for Protein: Q9Y546

LRRC42, Leucine-rich repeat-containing protein 42, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC42Q9Y546 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC42Q9Y546 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC42Q9Y546 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC42Q9Y546 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC42Q9Y546 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC42Q9Y546 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC42Q9Y546 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC42Q9Y546 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.96■□□□□ 0.79
LRRC42Q9Y546 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.96■□□□□ 0.79
LRRC42Q9Y546 AC005082.1-201ENST00000413042 2259 ntBASIC19.96■□□□□ 0.79
LRRC42Q9Y546 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC42Q9Y546 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
LRRC42Q9Y546 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.96■□□□□ 0.79
LRRC42Q9Y546 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.96■□□□□ 0.79
LRRC42Q9Y546 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LRRC42Q9Y546 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 GFER-205ENST00000569451 517 ntTSL 5 BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
LRRC42Q9Y546 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
LRRC42Q9Y546 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
LRRC42Q9Y546 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC19.94■□□□□ 0.78
LRRC42Q9Y546 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LRRC42Q9Y546 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.94■□□□□ 0.78
LRRC42Q9Y546 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LRRC42Q9Y546 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
LRRC42Q9Y546 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LRRC42Q9Y546 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.94■□□□□ 0.78
LRRC42Q9Y546 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LRRC42Q9Y546 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC19.93■□□□□ 0.78
LRRC42Q9Y546 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LRRC42Q9Y546 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LRRC42Q9Y546 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LRRC42Q9Y546 MIR639-201ENST00000384974 98 ntBASIC19.93■□□□□ 0.78
LRRC42Q9Y546 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LRRC42Q9Y546 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LRRC42Q9Y546 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
LRRC42Q9Y546 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LRRC42Q9Y546 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LRRC42Q9Y546 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
LRRC42Q9Y546 NEFHP1-201ENST00000412845 2629 ntBASIC19.92■□□□□ 0.78
LRRC42Q9Y546 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.92■□□□□ 0.78
LRRC42Q9Y546 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LRRC42Q9Y546 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LRRC42Q9Y546 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
LRRC42Q9Y546 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC19.92■□□□□ 0.78
LRRC42Q9Y546 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LRRC42Q9Y546 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LRRC42Q9Y546 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LRRC42Q9Y546 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.92■□□□□ 0.78
LRRC42Q9Y546 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LRRC42Q9Y546 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
LRRC42Q9Y546 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LRRC42Q9Y546 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LRRC42Q9Y546 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LRRC42Q9Y546 PLK5-205ENST00000642079 1969 ntBASIC19.92■□□□□ 0.78
LRRC42Q9Y546 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.91■□□□□ 0.78
LRRC42Q9Y546 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LRRC42Q9Y546 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LRRC42Q9Y546 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.91■□□□□ 0.78
LRRC42Q9Y546 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.91■□□□□ 0.78
LRRC42Q9Y546 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.91■□□□□ 0.78
LRRC42Q9Y546 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LRRC42Q9Y546 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC19.91■□□□□ 0.78
LRRC42Q9Y546 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LRRC42Q9Y546 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LRRC42Q9Y546 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
LRRC42Q9Y546 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LRRC42Q9Y546 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LRRC42Q9Y546 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LRRC42Q9Y546 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LRRC42Q9Y546 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LRRC42Q9Y546 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LRRC42Q9Y546 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
LRRC42Q9Y546 TPT1-202ENST00000379055 948 ntTSL 2 BASIC19.9■□□□□ 0.78
LRRC42Q9Y546 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC19.9■□□□□ 0.78
LRRC42Q9Y546 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LRRC42Q9Y546 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LRRC42Q9Y546 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms