Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4BQ9Y4P1 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4BQ9Y4P1 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.02■□□□□ 0.8
ATG4BQ9Y4P1 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
ATG4BQ9Y4P1 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ATG4BQ9Y4P1 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ATG4BQ9Y4P1 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
ATG4BQ9Y4P1 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.02■□□□□ 0.8
ATG4BQ9Y4P1 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
ATG4BQ9Y4P1 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
ATG4BQ9Y4P1 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ATG4BQ9Y4P1 AC079140.4-201ENST00000507448 529 ntBASIC20.02■□□□□ 0.8
ATG4BQ9Y4P1 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.02■□□□□ 0.8
ATG4BQ9Y4P1 CCDC92B-201ENST00000575506 885 ntBASIC20.02■□□□□ 0.8
ATG4BQ9Y4P1 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.02■□□□□ 0.8
ATG4BQ9Y4P1 MIR5787-201ENST00000611784 55 ntBASIC20.02■□□□□ 0.8
ATG4BQ9Y4P1 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ATG4BQ9Y4P1 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
ATG4BQ9Y4P1 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.79
ATG4BQ9Y4P1 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
ATG4BQ9Y4P1 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
ATG4BQ9Y4P1 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
ATG4BQ9Y4P1 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
ATG4BQ9Y4P1 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.01■□□□□ 0.79
ATG4BQ9Y4P1 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4BQ9Y4P1 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.01■□□□□ 0.79
ATG4BQ9Y4P1 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4BQ9Y4P1 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4BQ9Y4P1 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4BQ9Y4P1 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.01■□□□□ 0.79
ATG4BQ9Y4P1 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4BQ9Y4P1 AC087623.3-201ENST00000607047 1098 ntBASIC20.01■□□□□ 0.79
ATG4BQ9Y4P1 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4BQ9Y4P1 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4BQ9Y4P1 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4BQ9Y4P1 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.01■□□□□ 0.79
ATG4BQ9Y4P1 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4BQ9Y4P1 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ATG4BQ9Y4P1 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20■□□□□ 0.79
ATG4BQ9Y4P1 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ATG4BQ9Y4P1 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20■□□□□ 0.79
ATG4BQ9Y4P1 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ATG4BQ9Y4P1 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20■□□□□ 0.79
ATG4BQ9Y4P1 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ATG4BQ9Y4P1 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
ATG4BQ9Y4P1 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ATG4BQ9Y4P1 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20■□□□□ 0.79
ATG4BQ9Y4P1 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ATG4BQ9Y4P1 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20■□□□□ 0.79
ATG4BQ9Y4P1 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ATG4BQ9Y4P1 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20■□□□□ 0.79
ATG4BQ9Y4P1 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ATG4BQ9Y4P1 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ATG4BQ9Y4P1 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
ATG4BQ9Y4P1 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ATG4BQ9Y4P1 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.99■□□□□ 0.79
ATG4BQ9Y4P1 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.99■□□□□ 0.79
ATG4BQ9Y4P1 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
ATG4BQ9Y4P1 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.99■□□□□ 0.79
ATG4BQ9Y4P1 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ATG4BQ9Y4P1 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.99■□□□□ 0.79
ATG4BQ9Y4P1 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.99■□□□□ 0.79
ATG4BQ9Y4P1 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ATG4BQ9Y4P1 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.98■□□□□ 0.79
ATG4BQ9Y4P1 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
ATG4BQ9Y4P1 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.98■□□□□ 0.79
ATG4BQ9Y4P1 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.98■□□□□ 0.79
ATG4BQ9Y4P1 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ATG4BQ9Y4P1 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
ATG4BQ9Y4P1 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
ATG4BQ9Y4P1 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ATG4BQ9Y4P1 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.98■□□□□ 0.79
ATG4BQ9Y4P1 KRT18P14-201ENST00000534205 1250 ntBASIC19.98■□□□□ 0.79
ATG4BQ9Y4P1 EEF1DP3-203ENST00000566025 782 ntBASIC19.98■□□□□ 0.79
ATG4BQ9Y4P1 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.98■□□□□ 0.79
ATG4BQ9Y4P1 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
ATG4BQ9Y4P1 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.98■□□□□ 0.79
ATG4BQ9Y4P1 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.98■□□□□ 0.79
ATG4BQ9Y4P1 KRT87P-202ENST00000534226 1464 ntBASIC19.98■□□□□ 0.79
ATG4BQ9Y4P1 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.98■□□□□ 0.79
ATG4BQ9Y4P1 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.98■□□□□ 0.79
ATG4BQ9Y4P1 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
ATG4BQ9Y4P1 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
ATG4BQ9Y4P1 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
ATG4BQ9Y4P1 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
ATG4BQ9Y4P1 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
ATG4BQ9Y4P1 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.97■□□□□ 0.79
ATG4BQ9Y4P1 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
ATG4BQ9Y4P1 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
ATG4BQ9Y4P1 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
ATG4BQ9Y4P1 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.97■□□□□ 0.79
ATG4BQ9Y4P1 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.97■□□□□ 0.79
ATG4BQ9Y4P1 AC053503.5-201ENST00000601508 636 ntBASIC19.97■□□□□ 0.79
ATG4BQ9Y4P1 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
ATG4BQ9Y4P1 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.97■□□□□ 0.79
ATG4BQ9Y4P1 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
ATG4BQ9Y4P1 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
ATG4BQ9Y4P1 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
ATG4BQ9Y4P1 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.97■□□□□ 0.79
ATG4BQ9Y4P1 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms