Protein–RNA interactions for Protein: Q9P2I0

CPSF2, Cleavage and polyadenylation specificity factor subunit 2, humanhuman

Known RBP Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF2Q9P2I0 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
CPSF2Q9P2I0 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CPSF2Q9P2I0 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CPSF2Q9P2I0 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CPSF2Q9P2I0 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.19■□□□□ 0.98
CPSF2Q9P2I0 FEM1AP4-201ENST00000443167 1987 ntBASIC21.19■□□□□ 0.98
CPSF2Q9P2I0 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.19■□□□□ 0.98
CPSF2Q9P2I0 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CPSF2Q9P2I0 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CPSF2Q9P2I0 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.19■□□□□ 0.98
CPSF2Q9P2I0 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.19■□□□□ 0.98
CPSF2Q9P2I0 AL356441.2-201ENST00000443009 864 ntBASIC21.19■□□□□ 0.98
CPSF2Q9P2I0 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CPSF2Q9P2I0 AC092171.4-201ENST00000609130 632 ntBASIC21.19■□□□□ 0.98
CPSF2Q9P2I0 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CPSF2Q9P2I0 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.19■□□□□ 0.98
CPSF2Q9P2I0 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CPSF2Q9P2I0 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CPSF2Q9P2I0 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CPSF2Q9P2I0 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CPSF2Q9P2I0 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
CPSF2Q9P2I0 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CPSF2Q9P2I0 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CPSF2Q9P2I0 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CPSF2Q9P2I0 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.18■□□□□ 0.98
CPSF2Q9P2I0 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.18■□□□□ 0.98
CPSF2Q9P2I0 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.18■□□□□ 0.98
CPSF2Q9P2I0 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CPSF2Q9P2I0 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.18■□□□□ 0.98
CPSF2Q9P2I0 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CPSF2Q9P2I0 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.18■□□□□ 0.98
CPSF2Q9P2I0 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.18■□□□□ 0.98
CPSF2Q9P2I0 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CPSF2Q9P2I0 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CPSF2Q9P2I0 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.18■□□□□ 0.98
CPSF2Q9P2I0 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CPSF2Q9P2I0 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CPSF2Q9P2I0 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
CPSF2Q9P2I0 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CPSF2Q9P2I0 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CPSF2Q9P2I0 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CPSF2Q9P2I0 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CPSF2Q9P2I0 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CPSF2Q9P2I0 OR2I1P-207ENST00000453522 948 ntBASIC21.17■□□□□ 0.98
CPSF2Q9P2I0 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.17■□□□□ 0.98
CPSF2Q9P2I0 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CPSF2Q9P2I0 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CPSF2Q9P2I0 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.17■□□□□ 0.98
CPSF2Q9P2I0 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.17■□□□□ 0.98
CPSF2Q9P2I0 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CPSF2Q9P2I0 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.17■□□□□ 0.98
CPSF2Q9P2I0 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CPSF2Q9P2I0 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
CPSF2Q9P2I0 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.16■□□□□ 0.98
CPSF2Q9P2I0 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CPSF2Q9P2I0 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CPSF2Q9P2I0 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CPSF2Q9P2I0 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CPSF2Q9P2I0 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CPSF2Q9P2I0 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CPSF2Q9P2I0 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CPSF2Q9P2I0 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CPSF2Q9P2I0 AC010525.1-201ENST00000585559 441 ntBASIC21.16■□□□□ 0.98
CPSF2Q9P2I0 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.16■□□□□ 0.98
CPSF2Q9P2I0 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CPSF2Q9P2I0 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CPSF2Q9P2I0 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CPSF2Q9P2I0 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
CPSF2Q9P2I0 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CPSF2Q9P2I0 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.15■□□□□ 0.98
CPSF2Q9P2I0 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CPSF2Q9P2I0 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CPSF2Q9P2I0 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC21.15■□□□□ 0.98
CPSF2Q9P2I0 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CPSF2Q9P2I0 PTCHD3P2-201ENST00000424937 1205 ntBASIC21.15■□□□□ 0.98
CPSF2Q9P2I0 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CPSF2Q9P2I0 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.15■□□□□ 0.98
CPSF2Q9P2I0 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.15■□□□□ 0.98
CPSF2Q9P2I0 AC087239.1-201ENST00000622671 572 ntBASIC21.15■□□□□ 0.98
CPSF2Q9P2I0 AC068587.7-201ENST00000641602 218 ntBASIC21.15■□□□□ 0.98
CPSF2Q9P2I0 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
CPSF2Q9P2I0 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CPSF2Q9P2I0 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CPSF2Q9P2I0 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CPSF2Q9P2I0 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
CPSF2Q9P2I0 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CPSF2Q9P2I0 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
CPSF2Q9P2I0 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.14■□□□□ 0.98
CPSF2Q9P2I0 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CPSF2Q9P2I0 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CPSF2Q9P2I0 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CPSF2Q9P2I0 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.14■□□□□ 0.97
CPSF2Q9P2I0 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
CPSF2Q9P2I0 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.14■□□□□ 0.97
CPSF2Q9P2I0 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CPSF2Q9P2I0 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CPSF2Q9P2I0 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.97
CPSF2Q9P2I0 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
CPSF2Q9P2I0 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CPSF2Q9P2I0 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms