Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.66■□□□□ 0.9
LMX1AQ8TE12 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.66■□□□□ 0.9
LMX1AQ8TE12 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.66■□□□□ 0.9
LMX1AQ8TE12 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LMX1AQ8TE12 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
LMX1AQ8TE12 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LMX1AQ8TE12 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
LMX1AQ8TE12 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.66■□□□□ 0.9
LMX1AQ8TE12 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LMX1AQ8TE12 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LMX1AQ8TE12 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LMX1AQ8TE12 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
LMX1AQ8TE12 AC092053.2-201ENST00000640557 1818 ntBASIC20.65■□□□□ 0.9
LMX1AQ8TE12 AC003102.1-202ENST00000563394 1796 ntBASIC20.65■□□□□ 0.9
LMX1AQ8TE12 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.65■□□□□ 0.9
LMX1AQ8TE12 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.65■□□□□ 0.9
LMX1AQ8TE12 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LMX1AQ8TE12 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LMX1AQ8TE12 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.65■□□□□ 0.9
LMX1AQ8TE12 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.65■□□□□ 0.9
LMX1AQ8TE12 AC016405.3-201ENST00000607710 860 ntBASIC20.65■□□□□ 0.9
LMX1AQ8TE12 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.65■□□□□ 0.9
LMX1AQ8TE12 OR10C1-204ENST00000622521 1039 ntBASIC20.65■□□□□ 0.9
LMX1AQ8TE12 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.65■□□□□ 0.9
LMX1AQ8TE12 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LMX1AQ8TE12 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.65■□□□□ 0.9
LMX1AQ8TE12 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LMX1AQ8TE12 AC061975.6-201ENST00000579045 1553 ntBASIC20.64■□□□□ 0.9
LMX1AQ8TE12 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LMX1AQ8TE12 KRT16P2-201ENST00000414673 1423 ntBASIC20.64■□□□□ 0.89
LMX1AQ8TE12 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LMX1AQ8TE12 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
LMX1AQ8TE12 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
LMX1AQ8TE12 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LMX1AQ8TE12 AC093787.1-201ENST00000450396 207 ntBASIC20.64■□□□□ 0.89
LMX1AQ8TE12 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LMX1AQ8TE12 MIR4758-201ENST00000577688 71 ntBASIC20.64■□□□□ 0.89
LMX1AQ8TE12 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.64■□□□□ 0.89
LMX1AQ8TE12 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
LMX1AQ8TE12 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
LMX1AQ8TE12 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LMX1AQ8TE12 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.64■□□□□ 0.89
LMX1AQ8TE12 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LMX1AQ8TE12 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LMX1AQ8TE12 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.64■□□□□ 0.89
LMX1AQ8TE12 C1orf229-201ENST00000623686 2258 ntBASIC20.64■□□□□ 0.89
LMX1AQ8TE12 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LMX1AQ8TE12 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
LMX1AQ8TE12 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC20.63■□□□□ 0.89
LMX1AQ8TE12 MIPEPP3-201ENST00000412105 444 ntBASIC20.63■□□□□ 0.89
LMX1AQ8TE12 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
LMX1AQ8TE12 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.63■□□□□ 0.89
LMX1AQ8TE12 TMEM191A-211ENST00000637163 1067 ntBASIC20.63■□□□□ 0.89
LMX1AQ8TE12 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.63■□□□□ 0.89
LMX1AQ8TE12 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LMX1AQ8TE12 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.63■□□□□ 0.89
LMX1AQ8TE12 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LMX1AQ8TE12 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LMX1AQ8TE12 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LMX1AQ8TE12 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LMX1AQ8TE12 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
LMX1AQ8TE12 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
LMX1AQ8TE12 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LMX1AQ8TE12 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LMX1AQ8TE12 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LMX1AQ8TE12 AC073210.2-201ENST00000430369 194 ntBASIC20.62■□□□□ 0.89
LMX1AQ8TE12 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.62■□□□□ 0.89
LMX1AQ8TE12 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LMX1AQ8TE12 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LMX1AQ8TE12 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.62■□□□□ 0.89
LMX1AQ8TE12 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.62■□□□□ 0.89
LMX1AQ8TE12 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.61■□□□□ 0.89
LMX1AQ8TE12 RBM17P2-201ENST00000616397 1405 ntBASIC20.61■□□□□ 0.89
LMX1AQ8TE12 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
LMX1AQ8TE12 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LMX1AQ8TE12 AC080038.3-201ENST00000623346 1952 ntBASIC20.61■□□□□ 0.89
LMX1AQ8TE12 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LMX1AQ8TE12 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
LMX1AQ8TE12 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.61■□□□□ 0.89
LMX1AQ8TE12 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LMX1AQ8TE12 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LMX1AQ8TE12 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.61■□□□□ 0.89
LMX1AQ8TE12 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.61■□□□□ 0.89
LMX1AQ8TE12 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.61■□□□□ 0.89
LMX1AQ8TE12 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
LMX1AQ8TE12 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.61■□□□□ 0.89
LMX1AQ8TE12 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
LMX1AQ8TE12 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
LMX1AQ8TE12 C9orf163-202ENST00000624034 2573 ntBASIC20.61■□□□□ 0.89
LMX1AQ8TE12 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LMX1AQ8TE12 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.61■□□□□ 0.89
LMX1AQ8TE12 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LMX1AQ8TE12 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LMX1AQ8TE12 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.6■□□□□ 0.89
LMX1AQ8TE12 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LMX1AQ8TE12 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
LMX1AQ8TE12 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LMX1AQ8TE12 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
LMX1AQ8TE12 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.6■□□□□ 0.89
LMX1AQ8TE12 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms