Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
SLC44A3Q8N4M1 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SLC44A3Q8N4M1 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SLC44A3Q8N4M1 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SLC44A3Q8N4M1 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.79■■□□□ 1.08
SLC44A3Q8N4M1 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SLC44A3Q8N4M1 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21.79■■□□□ 1.08
SLC44A3Q8N4M1 AP003097.1-201ENST00000530657 1135 ntBASIC21.79■■□□□ 1.08
SLC44A3Q8N4M1 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.79■■□□□ 1.08
SLC44A3Q8N4M1 AC243732.1-201ENST00000612648 864 ntBASIC21.79■■□□□ 1.08
SLC44A3Q8N4M1 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SLC44A3Q8N4M1 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SLC44A3Q8N4M1 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SLC44A3Q8N4M1 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SLC44A3Q8N4M1 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.79■■□□□ 1.08
SLC44A3Q8N4M1 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SLC44A3Q8N4M1 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SLC44A3Q8N4M1 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SLC44A3Q8N4M1 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC21.78■■□□□ 1.08
SLC44A3Q8N4M1 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SLC44A3Q8N4M1 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.78■■□□□ 1.08
SLC44A3Q8N4M1 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC21.78■■□□□ 1.08
SLC44A3Q8N4M1 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC21.78■■□□□ 1.08
SLC44A3Q8N4M1 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SLC44A3Q8N4M1 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.78■■□□□ 1.08
SLC44A3Q8N4M1 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21.78■■□□□ 1.08
SLC44A3Q8N4M1 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SLC44A3Q8N4M1 AC093323.1-202ENST00000635031 2045 ntBASIC21.78■■□□□ 1.08
SLC44A3Q8N4M1 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SLC44A3Q8N4M1 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SLC44A3Q8N4M1 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SLC44A3Q8N4M1 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
SLC44A3Q8N4M1 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SLC44A3Q8N4M1 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SLC44A3Q8N4M1 PEX7-202ENST00000367756 680 ntTSL 3 BASIC21.77■■□□□ 1.08
SLC44A3Q8N4M1 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC21.77■■□□□ 1.08
SLC44A3Q8N4M1 LSM12P1-201ENST00000411836 588 ntBASIC21.77■■□□□ 1.08
SLC44A3Q8N4M1 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SLC44A3Q8N4M1 GATS-209ENST00000454084 1030 ntTSL 3 BASIC21.77■■□□□ 1.08
SLC44A3Q8N4M1 AC008550.1-201ENST00000511500 884 ntBASIC21.77■■□□□ 1.08
SLC44A3Q8N4M1 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC21.77■■□□□ 1.08
SLC44A3Q8N4M1 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SLC44A3Q8N4M1 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SLC44A3Q8N4M1 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SLC44A3Q8N4M1 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC21.76■■□□□ 1.07
SLC44A3Q8N4M1 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SLC44A3Q8N4M1 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SLC44A3Q8N4M1 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
SLC44A3Q8N4M1 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
SLC44A3Q8N4M1 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.76■■□□□ 1.07
SLC44A3Q8N4M1 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC21.76■■□□□ 1.07
SLC44A3Q8N4M1 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SLC44A3Q8N4M1 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SLC44A3Q8N4M1 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.75■■□□□ 1.07
SLC44A3Q8N4M1 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SLC44A3Q8N4M1 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.75■■□□□ 1.07
SLC44A3Q8N4M1 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SLC44A3Q8N4M1 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
SLC44A3Q8N4M1 UBE2SP1-201ENST00000450587 669 ntBASIC21.75■■□□□ 1.07
SLC44A3Q8N4M1 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21.75■■□□□ 1.07
SLC44A3Q8N4M1 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC21.75■■□□□ 1.07
SLC44A3Q8N4M1 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC21.75■■□□□ 1.07
SLC44A3Q8N4M1 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SLC44A3Q8N4M1 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SLC44A3Q8N4M1 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.74■■□□□ 1.07
SLC44A3Q8N4M1 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.74■■□□□ 1.07
SLC44A3Q8N4M1 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
SLC44A3Q8N4M1 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SLC44A3Q8N4M1 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
SLC44A3Q8N4M1 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
SLC44A3Q8N4M1 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SLC44A3Q8N4M1 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SLC44A3Q8N4M1 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SLC44A3Q8N4M1 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SLC44A3Q8N4M1 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
SLC44A3Q8N4M1 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
SLC44A3Q8N4M1 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.74■■□□□ 1.07
SLC44A3Q8N4M1 MME-217ENST00000616757 1315 ntTSL 5 BASIC21.74■■□□□ 1.07
SLC44A3Q8N4M1 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.74■■□□□ 1.07
SLC44A3Q8N4M1 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SLC44A3Q8N4M1 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
SLC44A3Q8N4M1 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SLC44A3Q8N4M1 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC21.73■■□□□ 1.07
SLC44A3Q8N4M1 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC21.73■■□□□ 1.07
SLC44A3Q8N4M1 RHOD-202ENST00000532559 538 ntTSL 3 BASIC21.73■■□□□ 1.07
SLC44A3Q8N4M1 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC21.73■■□□□ 1.07
SLC44A3Q8N4M1 AL359736.2-201ENST00000621992 437 ntBASIC21.73■■□□□ 1.07
SLC44A3Q8N4M1 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SLC44A3Q8N4M1 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC21.73■■□□□ 1.07
SLC44A3Q8N4M1 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SLC44A3Q8N4M1 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC21.73■■□□□ 1.07
SLC44A3Q8N4M1 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms