Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
BEST3Q8N1M1 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
BEST3Q8N1M1 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
BEST3Q8N1M1 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
BEST3Q8N1M1 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
BEST3Q8N1M1 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
BEST3Q8N1M1 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
BEST3Q8N1M1 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
BEST3Q8N1M1 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
BEST3Q8N1M1 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
BEST3Q8N1M1 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.59■□□□□ 0.73
BEST3Q8N1M1 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
BEST3Q8N1M1 C1orf229-201ENST00000623686 2258 ntBASIC19.59■□□□□ 0.73
BEST3Q8N1M1 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
BEST3Q8N1M1 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
BEST3Q8N1M1 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
BEST3Q8N1M1 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
BEST3Q8N1M1 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
BEST3Q8N1M1 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
BEST3Q8N1M1 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
BEST3Q8N1M1 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
BEST3Q8N1M1 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
BEST3Q8N1M1 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.59■□□□□ 0.73
BEST3Q8N1M1 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.59■□□□□ 0.73
BEST3Q8N1M1 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
BEST3Q8N1M1 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
BEST3Q8N1M1 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
BEST3Q8N1M1 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
BEST3Q8N1M1 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
BEST3Q8N1M1 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
BEST3Q8N1M1 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
BEST3Q8N1M1 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
BEST3Q8N1M1 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
BEST3Q8N1M1 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
BEST3Q8N1M1 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
BEST3Q8N1M1 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
BEST3Q8N1M1 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.58■□□□□ 0.72
BEST3Q8N1M1 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.58■□□□□ 0.72
BEST3Q8N1M1 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.58■□□□□ 0.72
BEST3Q8N1M1 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
BEST3Q8N1M1 DUX4L16-201ENST00000555130 1264 ntBASIC19.58■□□□□ 0.72
BEST3Q8N1M1 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.58■□□□□ 0.72
BEST3Q8N1M1 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
BEST3Q8N1M1 AC053503.5-201ENST00000601508 636 ntBASIC19.58■□□□□ 0.72
BEST3Q8N1M1 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.58■□□□□ 0.72
BEST3Q8N1M1 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
BEST3Q8N1M1 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
BEST3Q8N1M1 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
BEST3Q8N1M1 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
BEST3Q8N1M1 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.58■□□□□ 0.72
BEST3Q8N1M1 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.58■□□□□ 0.72
BEST3Q8N1M1 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
BEST3Q8N1M1 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
BEST3Q8N1M1 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
BEST3Q8N1M1 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
BEST3Q8N1M1 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.57■□□□□ 0.72
BEST3Q8N1M1 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.57■□□□□ 0.72
BEST3Q8N1M1 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.57■□□□□ 0.72
BEST3Q8N1M1 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
BEST3Q8N1M1 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
BEST3Q8N1M1 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
BEST3Q8N1M1 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
BEST3Q8N1M1 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.57■□□□□ 0.72
BEST3Q8N1M1 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
BEST3Q8N1M1 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
BEST3Q8N1M1 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.57■□□□□ 0.72
BEST3Q8N1M1 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.57■□□□□ 0.72
BEST3Q8N1M1 KRT18P20-201ENST00000548986 1279 ntBASIC19.57■□□□□ 0.72
BEST3Q8N1M1 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.57■□□□□ 0.72
BEST3Q8N1M1 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.57■□□□□ 0.72
BEST3Q8N1M1 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.57■□□□□ 0.72
BEST3Q8N1M1 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.57■□□□□ 0.72
BEST3Q8N1M1 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
BEST3Q8N1M1 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
BEST3Q8N1M1 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
BEST3Q8N1M1 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.57■□□□□ 0.72
BEST3Q8N1M1 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
BEST3Q8N1M1 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
BEST3Q8N1M1 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
BEST3Q8N1M1 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
BEST3Q8N1M1 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
BEST3Q8N1M1 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
BEST3Q8N1M1 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
BEST3Q8N1M1 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
BEST3Q8N1M1 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
BEST3Q8N1M1 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
BEST3Q8N1M1 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
BEST3Q8N1M1 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
BEST3Q8N1M1 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.56■□□□□ 0.72
BEST3Q8N1M1 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.56■□□□□ 0.72
BEST3Q8N1M1 AC104771.1-201ENST00000603335 964 ntBASIC19.56■□□□□ 0.72
BEST3Q8N1M1 AC231657.2-201ENST00000624556 255 ntBASIC19.56■□□□□ 0.72
BEST3Q8N1M1 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
BEST3Q8N1M1 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
BEST3Q8N1M1 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
BEST3Q8N1M1 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
BEST3Q8N1M1 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
BEST3Q8N1M1 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
BEST3Q8N1M1 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
BEST3Q8N1M1 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms