Protein–RNA interactions for Protein: P78556

CCL20, C-C motif chemokine 20, humanhuman

Predictions only

Length 96 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL20P78556 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCL20P78556 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCL20P78556 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCL20P78556 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCL20P78556 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCL20P78556 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC16.67■□□□□ 0.26
CCL20P78556 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCL20P78556 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCL20P78556 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCL20P78556 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCL20P78556 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCL20P78556 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
CCL20P78556 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCL20P78556 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCL20P78556 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCL20P78556 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCL20P78556 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCL20P78556 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
CCL20P78556 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CCL20P78556 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC16.66■□□□□ 0.26
CCL20P78556 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCL20P78556 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCL20P78556 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCL20P78556 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC16.66■□□□□ 0.26
CCL20P78556 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
CCL20P78556 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCL20P78556 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCL20P78556 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCL20P78556 REST-206ENST00000612429 1376 ntTSL 5 BASIC16.65■□□□□ 0.26
CCL20P78556 REST-207ENST00000616975 1370 ntTSL 5 BASIC16.65■□□□□ 0.26
CCL20P78556 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCL20P78556 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCL20P78556 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCL20P78556 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCL20P78556 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCL20P78556 PARN-205ENST00000539279 1557 ntTSL 2 BASIC16.65■□□□□ 0.26
CCL20P78556 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCL20P78556 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCL20P78556 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCL20P78556 AC027702.1-201ENST00000563810 1770 ntBASIC16.65■□□□□ 0.26
CCL20P78556 AL592293.1-201ENST00000502889 1188 ntBASIC16.65■□□□□ 0.26
CCL20P78556 DUX4L4-201ENST00000566884 1269 ntBASIC16.65■□□□□ 0.26
CCL20P78556 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC16.65■□□□□ 0.26
CCL20P78556 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCL20P78556 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
CCL20P78556 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCL20P78556 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCL20P78556 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCL20P78556 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCL20P78556 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCL20P78556 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCL20P78556 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
CCL20P78556 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCL20P78556 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
CCL20P78556 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CCL20P78556 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC16.65■□□□□ 0.26
CCL20P78556 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
CCL20P78556 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
CCL20P78556 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC16.64■□□□□ 0.25
CCL20P78556 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCL20P78556 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCL20P78556 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCL20P78556 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCL20P78556 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCL20P78556 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCL20P78556 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
CCL20P78556 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCL20P78556 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCL20P78556 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCL20P78556 PLK5-205ENST00000642079 1969 ntBASIC16.64■□□□□ 0.25
CCL20P78556 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCL20P78556 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CCL20P78556 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCL20P78556 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCL20P78556 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC16.63■□□□□ 0.25
CCL20P78556 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CCL20P78556 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
CCL20P78556 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC16.63■□□□□ 0.25
CCL20P78556 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC16.63■□□□□ 0.25
CCL20P78556 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC16.63■□□□□ 0.25
CCL20P78556 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCL20P78556 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCL20P78556 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
CCL20P78556 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
CCL20P78556 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCL20P78556 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CCL20P78556 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC16.63■□□□□ 0.25
CCL20P78556 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCL20P78556 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCL20P78556 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCL20P78556 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
CCL20P78556 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
CCL20P78556 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CCL20P78556 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
CCL20P78556 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
CCL20P78556 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC16.62■□□□□ 0.25
CCL20P78556 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCL20P78556 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
CCL20P78556 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCL20P78556 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms