Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 FXN-202ENST00000396364 980 ntTSL 5 BASIC24.68■■□□□ 1.54
CTCFP49711 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
CTCFP49711 AC069544.1-201ENST00000609399 999 ntBASIC24.68■■□□□ 1.54
CTCFP49711 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC24.68■■□□□ 1.54
CTCFP49711 AC092865.7-201ENST00000641832 219 ntBASIC24.68■■□□□ 1.54
CTCFP49711 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
CTCFP49711 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC24.68■■□□□ 1.54
CTCFP49711 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC24.68■■□□□ 1.54
CTCFP49711 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CTCFP49711 MED17-227ENST00000640521 2047 ntTSL 5 BASIC24.68■■□□□ 1.54
CTCFP49711 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC24.67■■□□□ 1.54
CTCFP49711 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
CTCFP49711 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
CTCFP49711 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
CTCFP49711 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC24.67■■□□□ 1.54
CTCFP49711 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC24.67■■□□□ 1.54
CTCFP49711 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC24.67■■□□□ 1.54
CTCFP49711 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC24.67■■□□□ 1.54
CTCFP49711 AL591742.1-201ENST00000604433 565 ntBASIC24.67■■□□□ 1.54
CTCFP49711 SNX21-213ENST00000614929 587 ntTSL 5 BASIC24.67■■□□□ 1.54
CTCFP49711 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
CTCFP49711 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CTCFP49711 AC022211.4-201ENST00000625094 2161 ntBASIC24.67■■□□□ 1.54
CTCFP49711 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC24.67■■□□□ 1.54
CTCFP49711 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
CTCFP49711 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CTCFP49711 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
CTCFP49711 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
CTCFP49711 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CTCFP49711 CRAT-202ENST00000393384 973 ntTSL 2 BASIC24.66■■□□□ 1.54
CTCFP49711 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CTCFP49711 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
CTCFP49711 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC24.66■■□□□ 1.54
CTCFP49711 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CTCFP49711 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC24.66■■□□□ 1.54
CTCFP49711 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
CTCFP49711 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CTCFP49711 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
CTCFP49711 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
CTCFP49711 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CTCFP49711 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
CTCFP49711 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CTCFP49711 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC24.65■■□□□ 1.54
CTCFP49711 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
CTCFP49711 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CTCFP49711 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC24.65■■□□□ 1.54
CTCFP49711 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CTCFP49711 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC24.64■■□□□ 1.54
CTCFP49711 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
CTCFP49711 PNMA6B-201ENST00000538162 1200 ntBASIC24.64■■□□□ 1.54
CTCFP49711 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC24.64■■□□□ 1.54
CTCFP49711 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC24.64■■□□□ 1.54
CTCFP49711 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC24.64■■□□□ 1.54
CTCFP49711 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC24.64■■□□□ 1.54
CTCFP49711 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC24.64■■□□□ 1.54
CTCFP49711 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC24.64■■□□□ 1.53
CTCFP49711 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC24.63■■□□□ 1.53
CTCFP49711 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CTCFP49711 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
CTCFP49711 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC24.63■■□□□ 1.53
CTCFP49711 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC24.63■■□□□ 1.53
CTCFP49711 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CTCFP49711 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
CTCFP49711 ISG20-202ENST00000379224 540 ntTSL 3 BASIC24.63■■□□□ 1.53
CTCFP49711 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CTCFP49711 AL355075.4-201ENST00000554988 638 ntBASIC24.63■■□□□ 1.53
CTCFP49711 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC24.63■■□□□ 1.53
CTCFP49711 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
CTCFP49711 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
CTCFP49711 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
CTCFP49711 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC24.62■■□□□ 1.53
CTCFP49711 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CTCFP49711 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CTCFP49711 PBX1-209ENST00000485769 834 ntTSL 2 BASIC24.62■■□□□ 1.53
CTCFP49711 HES2-205ENST00000487437 968 ntTSL 3 BASIC24.62■■□□□ 1.53
CTCFP49711 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC24.62■■□□□ 1.53
CTCFP49711 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC24.62■■□□□ 1.53
CTCFP49711 NME3-204ENST00000563498 920 ntTSL 2 BASIC24.62■■□□□ 1.53
CTCFP49711 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC24.62■■□□□ 1.53
CTCFP49711 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC24.62■■□□□ 1.53
CTCFP49711 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC24.62■■□□□ 1.53
CTCFP49711 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC24.62■■□□□ 1.53
CTCFP49711 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC24.62■■□□□ 1.53
CTCFP49711 AC138932.3-201ENST00000567634 1902 ntBASIC24.62■■□□□ 1.53
CTCFP49711 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CTCFP49711 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC24.61■■□□□ 1.53
CTCFP49711 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
CTCFP49711 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CTCFP49711 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC24.61■■□□□ 1.53
CTCFP49711 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC24.61■■□□□ 1.53
CTCFP49711 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC24.61■■□□□ 1.53
CTCFP49711 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC24.61■■□□□ 1.53
CTCFP49711 TMEM202-AS1-202ENST00000565181 2325 ntBASIC24.61■■□□□ 1.53
CTCFP49711 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CTCFP49711 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CTCFP49711 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
CTCFP49711 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC24.6■■□□□ 1.53
CTCFP49711 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC24.6■■□□□ 1.53
CTCFP49711 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC24.6■■□□□ 1.53
CTCFP49711 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms