Protein–RNA interactions for Protein: P22090

RPS4Y1, 40S ribosomal protein S4, Y isoform 1, humanhuman

Known RBP Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS4Y1P22090 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RPS4Y1P22090 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
RPS4Y1P22090 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
RPS4Y1P22090 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RPS4Y1P22090 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RPS4Y1P22090 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RPS4Y1P22090 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.42■□□□□ 0.7
RPS4Y1P22090 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.42■□□□□ 0.7
RPS4Y1P22090 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RPS4Y1P22090 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RPS4Y1P22090 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RPS4Y1P22090 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.42■□□□□ 0.7
RPS4Y1P22090 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RPS4Y1P22090 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.42■□□□□ 0.7
RPS4Y1P22090 AL358852.1-201ENST00000623174 1268 ntBASIC19.42■□□□□ 0.7
RPS4Y1P22090 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.42■□□□□ 0.7
RPS4Y1P22090 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RPS4Y1P22090 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.42■□□□□ 0.7
RPS4Y1P22090 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RPS4Y1P22090 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
RPS4Y1P22090 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RPS4Y1P22090 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.41■□□□□ 0.7
RPS4Y1P22090 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RPS4Y1P22090 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RPS4Y1P22090 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.41■□□□□ 0.7
RPS4Y1P22090 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.41■□□□□ 0.7
RPS4Y1P22090 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
RPS4Y1P22090 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.41■□□□□ 0.7
RPS4Y1P22090 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.41■□□□□ 0.7
RPS4Y1P22090 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
RPS4Y1P22090 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RPS4Y1P22090 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
RPS4Y1P22090 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RPS4Y1P22090 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RPS4Y1P22090 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.4■□□□□ 0.7
RPS4Y1P22090 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.4■□□□□ 0.7
RPS4Y1P22090 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.4■□□□□ 0.7
RPS4Y1P22090 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.39■□□□□ 0.7
RPS4Y1P22090 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
RPS4Y1P22090 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.39■□□□□ 0.7
RPS4Y1P22090 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
RPS4Y1P22090 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
RPS4Y1P22090 MIR638-201ENST00000385237 100 ntBASIC19.39■□□□□ 0.69
RPS4Y1P22090 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.39■□□□□ 0.69
RPS4Y1P22090 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RPS4Y1P22090 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.39■□□□□ 0.69
RPS4Y1P22090 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.39■□□□□ 0.69
RPS4Y1P22090 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
RPS4Y1P22090 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.39■□□□□ 0.69
RPS4Y1P22090 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RPS4Y1P22090 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RPS4Y1P22090 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RPS4Y1P22090 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RPS4Y1P22090 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RPS4Y1P22090 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RPS4Y1P22090 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
RPS4Y1P22090 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RPS4Y1P22090 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.38■□□□□ 0.69
RPS4Y1P22090 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.38■□□□□ 0.69
RPS4Y1P22090 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.38■□□□□ 0.69
RPS4Y1P22090 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RPS4Y1P22090 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.38■□□□□ 0.69
RPS4Y1P22090 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.38■□□□□ 0.69
RPS4Y1P22090 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.38■□□□□ 0.69
RPS4Y1P22090 EEF1DP3-203ENST00000566025 782 ntBASIC19.38■□□□□ 0.69
RPS4Y1P22090 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.38■□□□□ 0.69
RPS4Y1P22090 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RPS4Y1P22090 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.38■□□□□ 0.69
RPS4Y1P22090 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.37■□□□□ 0.69
RPS4Y1P22090 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RPS4Y1P22090 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.37■□□□□ 0.69
RPS4Y1P22090 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RPS4Y1P22090 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RPS4Y1P22090 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RPS4Y1P22090 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.37■□□□□ 0.69
RPS4Y1P22090 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.37■□□□□ 0.69
RPS4Y1P22090 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RPS4Y1P22090 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RPS4Y1P22090 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
RPS4Y1P22090 MTURN-203ENST00000409688 843 ntTSL 2 BASIC19.37■□□□□ 0.69
RPS4Y1P22090 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.37■□□□□ 0.69
RPS4Y1P22090 AC105265.2-201ENST00000467189 838 ntBASIC19.37■□□□□ 0.69
RPS4Y1P22090 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RPS4Y1P22090 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.37■□□□□ 0.69
RPS4Y1P22090 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RPS4Y1P22090 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.37■□□□□ 0.69
RPS4Y1P22090 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
RPS4Y1P22090 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RPS4Y1P22090 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.36■□□□□ 0.69
RPS4Y1P22090 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.36■□□□□ 0.69
RPS4Y1P22090 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RPS4Y1P22090 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.36■□□□□ 0.69
RPS4Y1P22090 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
RPS4Y1P22090 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RPS4Y1P22090 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RPS4Y1P22090 AC053503.5-201ENST00000601508 636 ntBASIC19.36■□□□□ 0.69
RPS4Y1P22090 MIR6084-201ENST00000622012 110 ntBASIC19.36■□□□□ 0.69
RPS4Y1P22090 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
RPS4Y1P22090 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
RPS4Y1P22090 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms