Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.5■□□□□ 0.87
COL5A1P20908 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.5■□□□□ 0.87
COL5A1P20908 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.5■□□□□ 0.87
COL5A1P20908 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.5■□□□□ 0.87
COL5A1P20908 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL5A1P20908 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL5A1P20908 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
COL5A1P20908 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL5A1P20908 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL5A1P20908 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
COL5A1P20908 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL5A1P20908 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL5A1P20908 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.49■□□□□ 0.87
COL5A1P20908 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.49■□□□□ 0.87
COL5A1P20908 AP003097.1-201ENST00000530657 1135 ntBASIC20.49■□□□□ 0.87
COL5A1P20908 AC006058.3-201ENST00000606217 1069 ntBASIC20.49■□□□□ 0.87
COL5A1P20908 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL5A1P20908 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.49■□□□□ 0.87
COL5A1P20908 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL5A1P20908 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL5A1P20908 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL5A1P20908 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
COL5A1P20908 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.48■□□□□ 0.87
COL5A1P20908 ESRRAP1-201ENST00000400596 1257 ntBASIC20.48■□□□□ 0.87
COL5A1P20908 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL5A1P20908 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL5A1P20908 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL5A1P20908 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL5A1P20908 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL5A1P20908 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.48■□□□□ 0.87
COL5A1P20908 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.48■□□□□ 0.87
COL5A1P20908 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.47■□□□□ 0.87
COL5A1P20908 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL5A1P20908 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL5A1P20908 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
COL5A1P20908 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.47■□□□□ 0.87
COL5A1P20908 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.47■□□□□ 0.87
COL5A1P20908 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.47■□□□□ 0.87
COL5A1P20908 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.47■□□□□ 0.87
COL5A1P20908 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL5A1P20908 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL5A1P20908 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL5A1P20908 AC026366.1-201ENST00000488803 879 ntBASIC20.46■□□□□ 0.87
COL5A1P20908 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
COL5A1P20908 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.46■□□□□ 0.87
COL5A1P20908 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.46■□□□□ 0.87
COL5A1P20908 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.46■□□□□ 0.87
COL5A1P20908 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.46■□□□□ 0.87
COL5A1P20908 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.46■□□□□ 0.87
COL5A1P20908 AL591742.1-201ENST00000604433 565 ntBASIC20.46■□□□□ 0.87
COL5A1P20908 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
COL5A1P20908 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.46■□□□□ 0.87
COL5A1P20908 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL5A1P20908 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.46■□□□□ 0.87
COL5A1P20908 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL5A1P20908 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL5A1P20908 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
COL5A1P20908 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC20.46■□□□□ 0.87
COL5A1P20908 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.46■□□□□ 0.87
COL5A1P20908 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.46■□□□□ 0.87
COL5A1P20908 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
COL5A1P20908 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL5A1P20908 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.87
COL5A1P20908 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL5A1P20908 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL5A1P20908 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
COL5A1P20908 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL5A1P20908 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.45■□□□□ 0.86
COL5A1P20908 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.45■□□□□ 0.86
COL5A1P20908 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL5A1P20908 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL5A1P20908 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.45■□□□□ 0.86
COL5A1P20908 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.45■□□□□ 0.86
COL5A1P20908 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.45■□□□□ 0.86
COL5A1P20908 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.45■□□□□ 0.86
COL5A1P20908 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.45■□□□□ 0.86
COL5A1P20908 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL5A1P20908 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL5A1P20908 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL5A1P20908 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL5A1P20908 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.44■□□□□ 0.86
COL5A1P20908 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.44■□□□□ 0.86
COL5A1P20908 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL5A1P20908 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.44■□□□□ 0.86
COL5A1P20908 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.43■□□□□ 0.86
COL5A1P20908 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
COL5A1P20908 AL158047.1-201ENST00000445918 881 ntBASIC20.43■□□□□ 0.86
COL5A1P20908 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.43■□□□□ 0.86
COL5A1P20908 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.43■□□□□ 0.86
COL5A1P20908 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.43■□□□□ 0.86
COL5A1P20908 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL5A1P20908 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
COL5A1P20908 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
COL5A1P20908 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL5A1P20908 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL5A1P20908 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.43■□□□□ 0.86
COL5A1P20908 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL5A1P20908 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL5A1P20908 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL5A1P20908 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms