Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC24.99■■□□□ 1.59
HMGB1P09429 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC24.99■■□□□ 1.59
HMGB1P09429 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC24.99■■□□□ 1.59
HMGB1P09429 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC24.99■■□□□ 1.59
HMGB1P09429 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC24.99■■□□□ 1.59
HMGB1P09429 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
HMGB1P09429 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC24.98■■□□□ 1.59
HMGB1P09429 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
HMGB1P09429 STX5-203ENST00000394690 1568 ntTSL 5 BASIC24.98■■□□□ 1.59
HMGB1P09429 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
HMGB1P09429 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
HMGB1P09429 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC24.98■■□□□ 1.59
HMGB1P09429 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
HMGB1P09429 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC24.98■■□□□ 1.59
HMGB1P09429 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC24.98■■□□□ 1.59
HMGB1P09429 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
HMGB1P09429 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
HMGB1P09429 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
HMGB1P09429 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC24.98■■□□□ 1.59
HMGB1P09429 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
HMGB1P09429 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC24.97■■□□□ 1.59
HMGB1P09429 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
HMGB1P09429 PARN-205ENST00000539279 1557 ntTSL 2 BASIC24.97■■□□□ 1.59
HMGB1P09429 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC24.97■■□□□ 1.59
HMGB1P09429 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC24.97■■□□□ 1.59
HMGB1P09429 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
HMGB1P09429 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
HMGB1P09429 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
HMGB1P09429 RNF146-206ENST00000480444 843 ntTSL 2 BASIC24.97■■□□□ 1.59
HMGB1P09429 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC24.97■■□□□ 1.59
HMGB1P09429 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC24.97■■□□□ 1.59
HMGB1P09429 AC053503.5-201ENST00000601508 636 ntBASIC24.97■■□□□ 1.59
HMGB1P09429 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
HMGB1P09429 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
HMGB1P09429 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC24.97■■□□□ 1.59
HMGB1P09429 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC24.97■■□□□ 1.59
HMGB1P09429 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
HMGB1P09429 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
HMGB1P09429 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC24.96■■□□□ 1.59
HMGB1P09429 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC24.96■■□□□ 1.59
HMGB1P09429 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC24.96■■□□□ 1.59
HMGB1P09429 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
HMGB1P09429 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC24.96■■□□□ 1.59
HMGB1P09429 JTB-203ENST00000368589 1216 ntTSL 2 BASIC24.96■■□□□ 1.59
HMGB1P09429 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
HMGB1P09429 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC24.96■■□□□ 1.59
HMGB1P09429 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC24.96■■□□□ 1.59
HMGB1P09429 EEF1DP3-203ENST00000566025 782 ntBASIC24.96■■□□□ 1.59
HMGB1P09429 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
HMGB1P09429 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
HMGB1P09429 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
HMGB1P09429 AL137060.1-201ENST00000618151 2648 ntBASIC24.96■■□□□ 1.59
HMGB1P09429 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
HMGB1P09429 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC24.95■■□□□ 1.59
HMGB1P09429 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.59
HMGB1P09429 LINC02228-203ENST00000641970 1355 ntBASIC24.95■■□□□ 1.59
HMGB1P09429 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
HMGB1P09429 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC24.95■■□□□ 1.58
HMGB1P09429 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.58
HMGB1P09429 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
HMGB1P09429 AC123595.1-201ENST00000440769 1046 ntBASIC24.95■■□□□ 1.58
HMGB1P09429 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
HMGB1P09429 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
HMGB1P09429 RARG-204ENST00000543726 1779 ntTSL 2 BASIC24.95■■□□□ 1.58
HMGB1P09429 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC24.95■■□□□ 1.58
HMGB1P09429 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
HMGB1P09429 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
HMGB1P09429 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
HMGB1P09429 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC24.94■■□□□ 1.58
HMGB1P09429 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC24.94■■□□□ 1.58
HMGB1P09429 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
HMGB1P09429 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
HMGB1P09429 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC24.94■■□□□ 1.58
HMGB1P09429 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
HMGB1P09429 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
HMGB1P09429 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
HMGB1P09429 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
HMGB1P09429 AL024507.2-201ENST00000606070 2574 ntBASIC24.94■■□□□ 1.58
HMGB1P09429 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
HMGB1P09429 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
HMGB1P09429 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC24.93■■□□□ 1.58
HMGB1P09429 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
HMGB1P09429 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC24.93■■□□□ 1.58
HMGB1P09429 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
HMGB1P09429 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC24.93■■□□□ 1.58
HMGB1P09429 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
HMGB1P09429 AC079140.4-201ENST00000507448 529 ntBASIC24.93■■□□□ 1.58
HMGB1P09429 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC24.93■■□□□ 1.58
HMGB1P09429 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC24.93■■□□□ 1.58
HMGB1P09429 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
HMGB1P09429 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
HMGB1P09429 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC24.93■■□□□ 1.58
HMGB1P09429 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC24.93■■□□□ 1.58
HMGB1P09429 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
HMGB1P09429 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
HMGB1P09429 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
HMGB1P09429 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC24.92■■□□□ 1.58
HMGB1P09429 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
HMGB1P09429 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC24.91■■□□□ 1.58
HMGB1P09429 ZNRF2P3-201ENST00000424200 374 ntBASIC24.91■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms