Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHOX2O60902 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SHOX2O60902 HYI-213ENST00000583037 1322 ntTSL 5 BASIC21.26■□□□□ 0.99
SHOX2O60902 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SHOX2O60902 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.26■□□□□ 0.99
SHOX2O60902 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SHOX2O60902 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC21.25■□□□□ 0.99
SHOX2O60902 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.25■□□□□ 0.99
SHOX2O60902 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHOX2O60902 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHOX2O60902 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
SHOX2O60902 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC21.25■□□□□ 0.99
SHOX2O60902 IDNK-203ENST00000405990 629 ntTSL 2 BASIC21.25■□□□□ 0.99
SHOX2O60902 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHOX2O60902 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SHOX2O60902 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHOX2O60902 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SHOX2O60902 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHOX2O60902 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHOX2O60902 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.25■□□□□ 0.99
SHOX2O60902 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SHOX2O60902 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC21.25■□□□□ 0.99
SHOX2O60902 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHOX2O60902 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
SHOX2O60902 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SHOX2O60902 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SHOX2O60902 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHOX2O60902 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.24■□□□□ 0.99
SHOX2O60902 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHOX2O60902 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHOX2O60902 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SHOX2O60902 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SHOX2O60902 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC21.24■□□□□ 0.99
SHOX2O60902 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.24■□□□□ 0.99
SHOX2O60902 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHOX2O60902 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
SHOX2O60902 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.24■□□□□ 0.99
SHOX2O60902 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHOX2O60902 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHOX2O60902 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHOX2O60902 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHOX2O60902 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
SHOX2O60902 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHOX2O60902 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHOX2O60902 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHOX2O60902 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
SHOX2O60902 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
SHOX2O60902 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHOX2O60902 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
SHOX2O60902 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.23■□□□□ 0.99
SHOX2O60902 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.23■□□□□ 0.99
SHOX2O60902 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHOX2O60902 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.23■□□□□ 0.99
SHOX2O60902 DUX4L9-201ENST00000449051 1259 ntBASIC21.23■□□□□ 0.99
SHOX2O60902 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
SHOX2O60902 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC21.23■□□□□ 0.99
SHOX2O60902 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.23■□□□□ 0.99
SHOX2O60902 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHOX2O60902 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC21.23■□□□□ 0.99
SHOX2O60902 DET1-207ENST00000564406 2315 ntTSL 2 BASIC21.23■□□□□ 0.99
SHOX2O60902 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC21.23■□□□□ 0.99
SHOX2O60902 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHOX2O60902 LETM1P2-201ENST00000597330 2178 ntBASIC21.23■□□□□ 0.99
SHOX2O60902 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHOX2O60902 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC21.22■□□□□ 0.99
SHOX2O60902 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHOX2O60902 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHOX2O60902 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHOX2O60902 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SHOX2O60902 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SHOX2O60902 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHOX2O60902 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHOX2O60902 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC21.22■□□□□ 0.99
SHOX2O60902 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC21.22■□□□□ 0.99
SHOX2O60902 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SHOX2O60902 AP000974.1-201ENST00000623909 2387 ntBASIC21.22■□□□□ 0.99
SHOX2O60902 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SHOX2O60902 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
SHOX2O60902 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
SHOX2O60902 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.21■□□□□ 0.99
SHOX2O60902 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.21■□□□□ 0.99
SHOX2O60902 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SHOX2O60902 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SHOX2O60902 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SHOX2O60902 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SHOX2O60902 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SHOX2O60902 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SHOX2O60902 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC21.21■□□□□ 0.99
SHOX2O60902 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC21.21■□□□□ 0.99
SHOX2O60902 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.21■□□□□ 0.99
SHOX2O60902 AC026471.1-201ENST00000564629 3026 ntBASIC21.21■□□□□ 0.99
SHOX2O60902 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
SHOX2O60902 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SHOX2O60902 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.21■□□□□ 0.99
SHOX2O60902 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SHOX2O60902 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.21■□□□□ 0.99
SHOX2O60902 AL512408.1-201ENST00000569378 2000 ntBASIC21.21■□□□□ 0.99
SHOX2O60902 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC21.2■□□□□ 0.99
SHOX2O60902 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
SHOX2O60902 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms