Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.48■□□□□ 0.71
CPSF4LA6NMK7 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CPSF4LA6NMK7 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC19.48■□□□□ 0.71
CPSF4LA6NMK7 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
CPSF4LA6NMK7 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CPSF4LA6NMK7 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CPSF4LA6NMK7 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CPSF4LA6NMK7 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CPSF4LA6NMK7 AP006587.3-201ENST00000525742 1516 ntBASIC19.47■□□□□ 0.71
CPSF4LA6NMK7 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
CPSF4LA6NMK7 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
CPSF4LA6NMK7 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CPSF4LA6NMK7 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CPSF4LA6NMK7 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC19.47■□□□□ 0.71
CPSF4LA6NMK7 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CPSF4LA6NMK7 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC19.47■□□□□ 0.71
CPSF4LA6NMK7 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.47■□□□□ 0.71
CPSF4LA6NMK7 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CPSF4LA6NMK7 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CPSF4LA6NMK7 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CPSF4LA6NMK7 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CPSF4LA6NMK7 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CPSF4LA6NMK7 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CPSF4LA6NMK7 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.47■□□□□ 0.71
CPSF4LA6NMK7 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CPSF4LA6NMK7 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CPSF4LA6NMK7 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CPSF4LA6NMK7 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CPSF4LA6NMK7 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CPSF4LA6NMK7 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CPSF4LA6NMK7 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CPSF4LA6NMK7 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CPSF4LA6NMK7 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CPSF4LA6NMK7 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CPSF4LA6NMK7 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CPSF4LA6NMK7 AC126544.1-201ENST00000580842 1059 ntBASIC19.46■□□□□ 0.71
CPSF4LA6NMK7 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CPSF4LA6NMK7 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CPSF4LA6NMK7 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.46■□□□□ 0.71
CPSF4LA6NMK7 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
CPSF4LA6NMK7 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CPSF4LA6NMK7 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CPSF4LA6NMK7 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.45■□□□□ 0.7
CPSF4LA6NMK7 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CPSF4LA6NMK7 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.45■□□□□ 0.7
CPSF4LA6NMK7 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CPSF4LA6NMK7 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
CPSF4LA6NMK7 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC19.45■□□□□ 0.7
CPSF4LA6NMK7 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.45■□□□□ 0.7
CPSF4LA6NMK7 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.45■□□□□ 0.7
CPSF4LA6NMK7 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CPSF4LA6NMK7 SMUG1P1-201ENST00000590640 811 ntBASIC19.45■□□□□ 0.7
CPSF4LA6NMK7 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.45■□□□□ 0.7
CPSF4LA6NMK7 AC233992.3-201ENST00000607491 485 ntBASIC19.45■□□□□ 0.7
CPSF4LA6NMK7 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.45■□□□□ 0.7
CPSF4LA6NMK7 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.45■□□□□ 0.7
CPSF4LA6NMK7 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CPSF4LA6NMK7 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CPSF4LA6NMK7 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CPSF4LA6NMK7 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CPSF4LA6NMK7 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CPSF4LA6NMK7 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CPSF4LA6NMK7 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.45■□□□□ 0.7
CPSF4LA6NMK7 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CPSF4LA6NMK7 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CPSF4LA6NMK7 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CPSF4LA6NMK7 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.44■□□□□ 0.7
CPSF4LA6NMK7 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CPSF4LA6NMK7 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CPSF4LA6NMK7 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CPSF4LA6NMK7 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CPSF4LA6NMK7 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.44■□□□□ 0.7
CPSF4LA6NMK7 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CPSF4LA6NMK7 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
CPSF4LA6NMK7 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CPSF4LA6NMK7 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CPSF4LA6NMK7 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC19.44■□□□□ 0.7
CPSF4LA6NMK7 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC19.44■□□□□ 0.7
CPSF4LA6NMK7 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CPSF4LA6NMK7 AC135279.3-201ENST00000610945 1311 ntBASIC19.44■□□□□ 0.7
CPSF4LA6NMK7 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.44■□□□□ 0.7
CPSF4LA6NMK7 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CPSF4LA6NMK7 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CPSF4LA6NMK7 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CPSF4LA6NMK7 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CPSF4LA6NMK7 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19.43■□□□□ 0.7
CPSF4LA6NMK7 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CPSF4LA6NMK7 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CPSF4LA6NMK7 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CPSF4LA6NMK7 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.43■□□□□ 0.7
CPSF4LA6NMK7 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.43■□□□□ 0.7
CPSF4LA6NMK7 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.43■□□□□ 0.7
CPSF4LA6NMK7 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.43■□□□□ 0.7
CPSF4LA6NMK7 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CPSF4LA6NMK7 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CPSF4LA6NMK7 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.43■□□□□ 0.7
CPSF4LA6NMK7 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
CPSF4LA6NMK7 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CPSF4LA6NMK7 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CPSF4LA6NMK7 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms