Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MKS1Q9NXB0 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MKS1Q9NXB0 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.97■□□□□ 0.95
MKS1Q9NXB0 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.97■□□□□ 0.95
MKS1Q9NXB0 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
MKS1Q9NXB0 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
MKS1Q9NXB0 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
MKS1Q9NXB0 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MKS1Q9NXB0 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
MKS1Q9NXB0 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MKS1Q9NXB0 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MKS1Q9NXB0 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MKS1Q9NXB0 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
MKS1Q9NXB0 AC092171.4-201ENST00000609130 632 ntBASIC20.97■□□□□ 0.95
MKS1Q9NXB0 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
MKS1Q9NXB0 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.97■□□□□ 0.95
MKS1Q9NXB0 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
MKS1Q9NXB0 AP006587.3-201ENST00000525742 1516 ntBASIC20.97■□□□□ 0.95
MKS1Q9NXB0 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.97■□□□□ 0.95
MKS1Q9NXB0 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.97■□□□□ 0.95
MKS1Q9NXB0 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.97■□□□□ 0.95
MKS1Q9NXB0 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.97■□□□□ 0.95
MKS1Q9NXB0 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.97■□□□□ 0.95
MKS1Q9NXB0 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
MKS1Q9NXB0 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
MKS1Q9NXB0 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
MKS1Q9NXB0 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.96■□□□□ 0.95
MKS1Q9NXB0 RARRES2P1-201ENST00000474487 481 ntBASIC20.96■□□□□ 0.95
MKS1Q9NXB0 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.96■□□□□ 0.95
MKS1Q9NXB0 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.96■□□□□ 0.95
MKS1Q9NXB0 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.96■□□□□ 0.95
MKS1Q9NXB0 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
MKS1Q9NXB0 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.96■□□□□ 0.95
MKS1Q9NXB0 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
MKS1Q9NXB0 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MKS1Q9NXB0 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
MKS1Q9NXB0 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
MKS1Q9NXB0 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MKS1Q9NXB0 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.95■□□□□ 0.94
MKS1Q9NXB0 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MKS1Q9NXB0 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.95■□□□□ 0.94
MKS1Q9NXB0 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
MKS1Q9NXB0 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MKS1Q9NXB0 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
MKS1Q9NXB0 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
MKS1Q9NXB0 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MKS1Q9NXB0 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
MKS1Q9NXB0 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.95■□□□□ 0.94
MKS1Q9NXB0 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
MKS1Q9NXB0 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.95■□□□□ 0.94
MKS1Q9NXB0 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.95■□□□□ 0.94
MKS1Q9NXB0 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
MKS1Q9NXB0 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
MKS1Q9NXB0 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MKS1Q9NXB0 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
MKS1Q9NXB0 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
MKS1Q9NXB0 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.95■□□□□ 0.94
MKS1Q9NXB0 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MKS1Q9NXB0 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
MKS1Q9NXB0 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MKS1Q9NXB0 PKD1P6-201ENST00000343738 4769 ntBASIC20.94■□□□□ 0.94
MKS1Q9NXB0 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MKS1Q9NXB0 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MKS1Q9NXB0 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
MKS1Q9NXB0 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MKS1Q9NXB0 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
MKS1Q9NXB0 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
MKS1Q9NXB0 KRT16P3-201ENST00000439127 1283 ntBASIC20.94■□□□□ 0.94
MKS1Q9NXB0 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MKS1Q9NXB0 AP005435.1-201ENST00000529293 1178 ntBASIC20.94■□□□□ 0.94
MKS1Q9NXB0 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
MKS1Q9NXB0 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
MKS1Q9NXB0 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
MKS1Q9NXB0 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
MKS1Q9NXB0 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.93■□□□□ 0.94
MKS1Q9NXB0 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
MKS1Q9NXB0 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
MKS1Q9NXB0 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.93■□□□□ 0.94
MKS1Q9NXB0 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MKS1Q9NXB0 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MKS1Q9NXB0 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
MKS1Q9NXB0 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MKS1Q9NXB0 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.93■□□□□ 0.94
MKS1Q9NXB0 MIR3621-201ENST00000580529 85 ntBASIC20.93■□□□□ 0.94
MKS1Q9NXB0 AL356740.2-201ENST00000601559 647 ntBASIC20.93■□□□□ 0.94
MKS1Q9NXB0 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.93■□□□□ 0.94
MKS1Q9NXB0 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.93■□□□□ 0.94
MKS1Q9NXB0 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.93■□□□□ 0.94
MKS1Q9NXB0 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MKS1Q9NXB0 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
MKS1Q9NXB0 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
MKS1Q9NXB0 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
MKS1Q9NXB0 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
MKS1Q9NXB0 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
MKS1Q9NXB0 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.92■□□□□ 0.94
MKS1Q9NXB0 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.92■□□□□ 0.94
MKS1Q9NXB0 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.92■□□□□ 0.94
MKS1Q9NXB0 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.92■□□□□ 0.94
MKS1Q9NXB0 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.92■□□□□ 0.94
MKS1Q9NXB0 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 237.7 ms