Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC21.32■■□□□ 1
HMGB4Q8WW32 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC21.32■■□□□ 1
HMGB4Q8WW32 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
HMGB4Q8WW32 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.32■■□□□ 1
HMGB4Q8WW32 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HMGB4Q8WW32 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
HMGB4Q8WW32 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HMGB4Q8WW32 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.31■■□□□ 1
HMGB4Q8WW32 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
HMGB4Q8WW32 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC21.31■■□□□ 1
HMGB4Q8WW32 POU5F1P4-201ENST00000413175 1085 ntBASIC21.31■■□□□ 1
HMGB4Q8WW32 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC21.31■■□□□ 1
HMGB4Q8WW32 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.31■■□□□ 1
HMGB4Q8WW32 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC21.31■■□□□ 1
HMGB4Q8WW32 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC21.31■■□□□ 1
HMGB4Q8WW32 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.31■■□□□ 1
HMGB4Q8WW32 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.31■■□□□ 1
HMGB4Q8WW32 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
HMGB4Q8WW32 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.3■■□□□ 1
HMGB4Q8WW32 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
HMGB4Q8WW32 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.3■■□□□ 1
HMGB4Q8WW32 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HMGB4Q8WW32 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.3■■□□□ 1
HMGB4Q8WW32 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC21.3■■□□□ 1
HMGB4Q8WW32 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
HMGB4Q8WW32 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.3■■□□□ 1
HMGB4Q8WW32 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HMGB4Q8WW32 KRT18P29-201ENST00000397031 1267 ntBASIC21.3■■□□□ 1
HMGB4Q8WW32 AL512625.2-201ENST00000417533 625 ntBASIC21.3■■□□□ 1
HMGB4Q8WW32 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC21.3■■□□□ 1
HMGB4Q8WW32 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC21.3■■□□□ 1
HMGB4Q8WW32 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.3■■□□□ 1
HMGB4Q8WW32 AC008687.6-201ENST00000596318 630 ntBASIC21.3■■□□□ 1
HMGB4Q8WW32 AC092118.2-201ENST00000613495 667 ntBASIC21.3■■□□□ 1
HMGB4Q8WW32 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HMGB4Q8WW32 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.3■■□□□ 1
HMGB4Q8WW32 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HMGB4Q8WW32 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HMGB4Q8WW32 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
HMGB4Q8WW32 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
HMGB4Q8WW32 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.29■■□□□ 1
HMGB4Q8WW32 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HMGB4Q8WW32 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.29■■□□□ 1
HMGB4Q8WW32 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HMGB4Q8WW32 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HMGB4Q8WW32 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
HMGB4Q8WW32 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.29■■□□□ 1
HMGB4Q8WW32 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.29■■□□□ 1
HMGB4Q8WW32 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.29■■□□□ 1
HMGB4Q8WW32 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC21.29■■□□□ 1
HMGB4Q8WW32 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
HMGB4Q8WW32 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HMGB4Q8WW32 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HMGB4Q8WW32 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HMGB4Q8WW32 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HMGB4Q8WW32 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HMGB4Q8WW32 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.28■■□□□ 1
HMGB4Q8WW32 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HMGB4Q8WW32 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HMGB4Q8WW32 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HMGB4Q8WW32 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HMGB4Q8WW32 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.28■■□□□ 1
HMGB4Q8WW32 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC21.28■■□□□ 1
HMGB4Q8WW32 DET1-205ENST00000558413 583 ntTSL 4 BASIC21.28■■□□□ 1
HMGB4Q8WW32 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HMGB4Q8WW32 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.28■■□□□ 1
HMGB4Q8WW32 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC21.28■■□□□ 1
HMGB4Q8WW32 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.28■■□□□ 1
HMGB4Q8WW32 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HMGB4Q8WW32 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HMGB4Q8WW32 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.27■■□□□ 1
HMGB4Q8WW32 AC139530.1-201ENST00000575312 1977 ntBASIC21.27■■□□□ 1
HMGB4Q8WW32 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HMGB4Q8WW32 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HMGB4Q8WW32 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
HMGB4Q8WW32 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
HMGB4Q8WW32 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
HMGB4Q8WW32 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
HMGB4Q8WW32 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HMGB4Q8WW32 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC21.27■■□□□ 1
HMGB4Q8WW32 AC093827.2-201ENST00000512654 315 ntBASIC21.27■■□□□ 1
HMGB4Q8WW32 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC21.27■■□□□ 1
HMGB4Q8WW32 FGF8-207ENST00000618991 856 ntTSL 3 BASIC21.27■■□□□ 1
HMGB4Q8WW32 ITM2C-210ENST00000620962 501 ntBASIC21.27■■□□□ 1
HMGB4Q8WW32 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.27■■□□□ 1
HMGB4Q8WW32 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC21.27■□□□□ 0.99
HMGB4Q8WW32 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGB4Q8WW32 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGB4Q8WW32 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
HMGB4Q8WW32 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGB4Q8WW32 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.26■□□□□ 0.99
HMGB4Q8WW32 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
HMGB4Q8WW32 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGB4Q8WW32 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGB4Q8WW32 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGB4Q8WW32 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC21.26■□□□□ 0.99
HMGB4Q8WW32 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGB4Q8WW32 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HMGB4Q8WW32 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC21.26■□□□□ 0.99
HMGB4Q8WW32 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms