Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PPP4R4Q6NUP7 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PPP4R4Q6NUP7 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.21■□□□□ 0.83
PPP4R4Q6NUP7 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PPP4R4Q6NUP7 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PPP4R4Q6NUP7 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
PPP4R4Q6NUP7 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.21■□□□□ 0.83
PPP4R4Q6NUP7 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.21■□□□□ 0.83
PPP4R4Q6NUP7 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.21■□□□□ 0.83
PPP4R4Q6NUP7 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
PPP4R4Q6NUP7 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PPP4R4Q6NUP7 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PPP4R4Q6NUP7 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.21■□□□□ 0.83
PPP4R4Q6NUP7 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.21■□□□□ 0.83
PPP4R4Q6NUP7 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PPP4R4Q6NUP7 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PPP4R4Q6NUP7 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.21■□□□□ 0.83
PPP4R4Q6NUP7 LINC01006-201ENST00000333319 2292 ntBASIC20.2■□□□□ 0.82
PPP4R4Q6NUP7 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PPP4R4Q6NUP7 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PPP4R4Q6NUP7 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PPP4R4Q6NUP7 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PPP4R4Q6NUP7 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
PPP4R4Q6NUP7 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.2■□□□□ 0.82
PPP4R4Q6NUP7 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PPP4R4Q6NUP7 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PPP4R4Q6NUP7 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.2■□□□□ 0.82
PPP4R4Q6NUP7 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.2■□□□□ 0.82
PPP4R4Q6NUP7 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.2■□□□□ 0.82
PPP4R4Q6NUP7 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PPP4R4Q6NUP7 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
PPP4R4Q6NUP7 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.2■□□□□ 0.82
PPP4R4Q6NUP7 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
PPP4R4Q6NUP7 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
PPP4R4Q6NUP7 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PPP4R4Q6NUP7 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PPP4R4Q6NUP7 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PPP4R4Q6NUP7 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.19■□□□□ 0.82
PPP4R4Q6NUP7 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.19■□□□□ 0.82
PPP4R4Q6NUP7 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PPP4R4Q6NUP7 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PPP4R4Q6NUP7 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PPP4R4Q6NUP7 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.19■□□□□ 0.82
PPP4R4Q6NUP7 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
PPP4R4Q6NUP7 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PPP4R4Q6NUP7 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PPP4R4Q6NUP7 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PPP4R4Q6NUP7 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.19■□□□□ 0.82
PPP4R4Q6NUP7 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PPP4R4Q6NUP7 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PPP4R4Q6NUP7 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
PPP4R4Q6NUP7 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PPP4R4Q6NUP7 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
PPP4R4Q6NUP7 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.18■□□□□ 0.82
PPP4R4Q6NUP7 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PPP4R4Q6NUP7 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PPP4R4Q6NUP7 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PPP4R4Q6NUP7 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PPP4R4Q6NUP7 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
PPP4R4Q6NUP7 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PPP4R4Q6NUP7 AC099791.2-201ENST00000605725 427 ntBASIC20.18■□□□□ 0.82
PPP4R4Q6NUP7 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
PPP4R4Q6NUP7 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PPP4R4Q6NUP7 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PPP4R4Q6NUP7 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PPP4R4Q6NUP7 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PPP4R4Q6NUP7 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PPP4R4Q6NUP7 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
PPP4R4Q6NUP7 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PPP4R4Q6NUP7 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.17■□□□□ 0.82
PPP4R4Q6NUP7 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PPP4R4Q6NUP7 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.17■□□□□ 0.82
PPP4R4Q6NUP7 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PPP4R4Q6NUP7 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.17■□□□□ 0.82
PPP4R4Q6NUP7 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PPP4R4Q6NUP7 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PPP4R4Q6NUP7 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PPP4R4Q6NUP7 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PPP4R4Q6NUP7 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.17■□□□□ 0.82
PPP4R4Q6NUP7 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.16■□□□□ 0.82
PPP4R4Q6NUP7 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PPP4R4Q6NUP7 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PPP4R4Q6NUP7 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.16■□□□□ 0.82
PPP4R4Q6NUP7 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PPP4R4Q6NUP7 AC007952.6-201ENST00000573168 2673 ntBASIC20.16■□□□□ 0.82
PPP4R4Q6NUP7 AC003957.1-201ENST00000625108 2673 ntBASIC20.16■□□□□ 0.82
PPP4R4Q6NUP7 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PPP4R4Q6NUP7 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PPP4R4Q6NUP7 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PPP4R4Q6NUP7 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PPP4R4Q6NUP7 CA15P2-201ENST00000611168 834 ntBASIC20.16■□□□□ 0.82
PPP4R4Q6NUP7 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
PPP4R4Q6NUP7 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PPP4R4Q6NUP7 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
PPP4R4Q6NUP7 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.16■□□□□ 0.82
PPP4R4Q6NUP7 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
PPP4R4Q6NUP7 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PPP4R4Q6NUP7 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.16■□□□□ 0.82
PPP4R4Q6NUP7 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PPP4R4Q6NUP7 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms