Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
H3F3AP84243 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
H3F3AP84243 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
H3F3AP84243 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
H3F3AP84243 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
H3F3AP84243 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC18.98■□□□□ 0.63
H3F3AP84243 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
H3F3AP84243 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC18.98■□□□□ 0.63
H3F3AP84243 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
H3F3AP84243 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
H3F3AP84243 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
H3F3AP84243 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC18.98■□□□□ 0.63
H3F3AP84243 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
H3F3AP84243 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
H3F3AP84243 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
H3F3AP84243 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
H3F3AP84243 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
H3F3AP84243 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC18.97■□□□□ 0.63
H3F3AP84243 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
H3F3AP84243 AC244015.2-201ENST00000616358 1861 ntBASIC18.97■□□□□ 0.63
H3F3AP84243 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC18.97■□□□□ 0.63
H3F3AP84243 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC18.97■□□□□ 0.63
H3F3AP84243 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
H3F3AP84243 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
H3F3AP84243 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC18.97■□□□□ 0.63
H3F3AP84243 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
H3F3AP84243 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC18.97■□□□□ 0.63
H3F3AP84243 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
H3F3AP84243 EEF1DP3-203ENST00000566025 782 ntBASIC18.97■□□□□ 0.63
H3F3AP84243 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
H3F3AP84243 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.97■□□□□ 0.63
H3F3AP84243 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
H3F3AP84243 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
H3F3AP84243 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
H3F3AP84243 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
H3F3AP84243 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
H3F3AP84243 KRT87P-202ENST00000534226 1464 ntBASIC18.97■□□□□ 0.63
H3F3AP84243 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
H3F3AP84243 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.96■□□□□ 0.63
H3F3AP84243 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
H3F3AP84243 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
H3F3AP84243 AC034268.1-201ENST00000441047 882 ntBASIC18.96■□□□□ 0.63
H3F3AP84243 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC18.96■□□□□ 0.63
H3F3AP84243 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
H3F3AP84243 AC053503.5-201ENST00000601508 636 ntBASIC18.96■□□□□ 0.63
H3F3AP84243 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
H3F3AP84243 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC18.96■□□□□ 0.63
H3F3AP84243 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
H3F3AP84243 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
H3F3AP84243 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.62
H3F3AP84243 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC18.95■□□□□ 0.62
H3F3AP84243 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
H3F3AP84243 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
H3F3AP84243 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
H3F3AP84243 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.95■□□□□ 0.62
H3F3AP84243 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
H3F3AP84243 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
H3F3AP84243 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.95■□□□□ 0.62
H3F3AP84243 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC18.95■□□□□ 0.62
H3F3AP84243 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC18.95■□□□□ 0.62
H3F3AP84243 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
H3F3AP84243 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
H3F3AP84243 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
H3F3AP84243 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
H3F3AP84243 MFF-203ENST00000349901 1716 ntTSL 2 BASIC18.94■□□□□ 0.62
H3F3AP84243 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC18.94■□□□□ 0.62
H3F3AP84243 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
H3F3AP84243 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC18.94■□□□□ 0.62
H3F3AP84243 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
H3F3AP84243 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
H3F3AP84243 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
H3F3AP84243 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC18.94■□□□□ 0.62
H3F3AP84243 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.94■□□□□ 0.62
H3F3AP84243 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
H3F3AP84243 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC18.94■□□□□ 0.62
H3F3AP84243 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.94■□□□□ 0.62
H3F3AP84243 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC18.94■□□□□ 0.62
H3F3AP84243 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
H3F3AP84243 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC18.94■□□□□ 0.62
H3F3AP84243 AP004607.4-201ENST00000530158 1459 ntBASIC18.94■□□□□ 0.62
H3F3AP84243 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
H3F3AP84243 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
H3F3AP84243 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.93■□□□□ 0.62
H3F3AP84243 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC18.93■□□□□ 0.62
H3F3AP84243 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
H3F3AP84243 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
H3F3AP84243 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
H3F3AP84243 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
H3F3AP84243 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
H3F3AP84243 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
H3F3AP84243 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
H3F3AP84243 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
H3F3AP84243 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
H3F3AP84243 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
H3F3AP84243 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.93■□□□□ 0.62
H3F3AP84243 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC18.93■□□□□ 0.62
H3F3AP84243 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
H3F3AP84243 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC18.93■□□□□ 0.62
H3F3AP84243 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
H3F3AP84243 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms