Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLRN1P58418 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
CLRN1P58418 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLRN1P58418 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CLRN1P58418 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLRN1P58418 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CLRN1P58418 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC18.93■□□□□ 0.62
CLRN1P58418 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC18.93■□□□□ 0.62
CLRN1P58418 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
CLRN1P58418 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CLRN1P58418 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLRN1P58418 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
CLRN1P58418 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLRN1P58418 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC18.92■□□□□ 0.62
CLRN1P58418 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC18.92■□□□□ 0.62
CLRN1P58418 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
CLRN1P58418 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.92■□□□□ 0.62
CLRN1P58418 BX005040.4-201ENST00000637145 1518 ntBASIC18.92■□□□□ 0.62
CLRN1P58418 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLRN1P58418 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CLRN1P58418 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
CLRN1P58418 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
CLRN1P58418 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CLRN1P58418 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLRN1P58418 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLRN1P58418 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CLRN1P58418 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
CLRN1P58418 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLRN1P58418 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLRN1P58418 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC18.92■□□□□ 0.62
CLRN1P58418 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLRN1P58418 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLRN1P58418 AC003102.1-202ENST00000563394 1796 ntBASIC18.91■□□□□ 0.62
CLRN1P58418 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLRN1P58418 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLRN1P58418 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
CLRN1P58418 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLRN1P58418 MIR638-201ENST00000385237 100 ntBASIC18.91■□□□□ 0.62
CLRN1P58418 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CLRN1P58418 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC18.91■□□□□ 0.62
CLRN1P58418 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC18.91■□□□□ 0.62
CLRN1P58418 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC18.91■□□□□ 0.62
CLRN1P58418 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLRN1P58418 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CLRN1P58418 MPST-204ENST00000404393 1329 ntTSL 5 BASIC18.91■□□□□ 0.62
CLRN1P58418 AC007375.3-201ENST00000600936 2314 ntBASIC18.91■□□□□ 0.62
CLRN1P58418 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLRN1P58418 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CLRN1P58418 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
CLRN1P58418 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLRN1P58418 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLRN1P58418 PXK-203ENST00000383715 1756 ntTSL 5 BASIC18.91■□□□□ 0.62
CLRN1P58418 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CLRN1P58418 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLRN1P58418 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC18.9■□□□□ 0.62
CLRN1P58418 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC18.9■□□□□ 0.62
CLRN1P58418 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.9■□□□□ 0.62
CLRN1P58418 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
CLRN1P58418 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLRN1P58418 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLRN1P58418 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CLRN1P58418 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLRN1P58418 MTURN-203ENST00000409688 843 ntTSL 2 BASIC18.9■□□□□ 0.62
CLRN1P58418 AC105265.2-201ENST00000467189 838 ntBASIC18.9■□□□□ 0.62
CLRN1P58418 STOX2-205ENST00000513034 807 ntTSL 3 BASIC18.9■□□□□ 0.62
CLRN1P58418 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC18.9■□□□□ 0.62
CLRN1P58418 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLRN1P58418 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.62
CLRN1P58418 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.89■□□□□ 0.61
CLRN1P58418 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CLRN1P58418 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLRN1P58418 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC18.89■□□□□ 0.61
CLRN1P58418 RHOF-204ENST00000537265 699 ntTSL 2 BASIC18.89■□□□□ 0.61
CLRN1P58418 AC012414.1-201ENST00000556676 535 ntBASIC18.89■□□□□ 0.61
CLRN1P58418 AL354811.1-201ENST00000610286 706 ntBASIC18.89■□□□□ 0.61
CLRN1P58418 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC18.89■□□□□ 0.61
CLRN1P58418 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLRN1P58418 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC18.89■□□□□ 0.61
CLRN1P58418 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLRN1P58418 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLRN1P58418 Z98882.1-201ENST00000622160 2253 ntBASIC18.89■□□□□ 0.61
CLRN1P58418 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLRN1P58418 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLRN1P58418 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CLRN1P58418 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLRN1P58418 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLRN1P58418 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLRN1P58418 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLRN1P58418 NME4-202ENST00000382940 766 ntTSL 3 BASIC18.88■□□□□ 0.61
CLRN1P58418 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CLRN1P58418 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC18.88■□□□□ 0.61
CLRN1P58418 NME4-211ENST00000620944 1193 ntTSL 2 BASIC18.88■□□□□ 0.61
CLRN1P58418 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC18.88■□□□□ 0.61
CLRN1P58418 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
CLRN1P58418 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC18.88■□□□□ 0.61
CLRN1P58418 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLRN1P58418 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLRN1P58418 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLRN1P58418 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLRN1P58418 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms