Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
FOXA1P55317 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
FOXA1P55317 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.53■□□□□ 0.88
FOXA1P55317 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
FOXA1P55317 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
FOXA1P55317 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.53■□□□□ 0.88
FOXA1P55317 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.53■□□□□ 0.88
FOXA1P55317 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
FOXA1P55317 AC133561.4-201ENST00000566112 224 ntBASIC20.53■□□□□ 0.88
FOXA1P55317 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
FOXA1P55317 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
FOXA1P55317 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.53■□□□□ 0.88
FOXA1P55317 AL049796.1-201ENST00000565336 1766 ntBASIC20.53■□□□□ 0.88
FOXA1P55317 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
FOXA1P55317 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
FOXA1P55317 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
FOXA1P55317 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
FOXA1P55317 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
FOXA1P55317 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.53■□□□□ 0.88
FOXA1P55317 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
FOXA1P55317 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
FOXA1P55317 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
FOXA1P55317 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
FOXA1P55317 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
FOXA1P55317 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
FOXA1P55317 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
FOXA1P55317 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
FOXA1P55317 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.52■□□□□ 0.88
FOXA1P55317 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
FOXA1P55317 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
FOXA1P55317 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
FOXA1P55317 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
FOXA1P55317 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.52■□□□□ 0.88
FOXA1P55317 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.52■□□□□ 0.88
FOXA1P55317 BX842568.3-201ENST00000418104 571 ntBASIC20.52■□□□□ 0.88
FOXA1P55317 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.52■□□□□ 0.88
FOXA1P55317 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.52■□□□□ 0.88
FOXA1P55317 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.52■□□□□ 0.88
FOXA1P55317 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
FOXA1P55317 SLC25A24-204ENST00000569674 2357 ntBASIC20.52■□□□□ 0.88
FOXA1P55317 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
FOXA1P55317 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
FOXA1P55317 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
FOXA1P55317 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
FOXA1P55317 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
FOXA1P55317 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.51■□□□□ 0.87
FOXA1P55317 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.51■□□□□ 0.87
FOXA1P55317 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.51■□□□□ 0.87
FOXA1P55317 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.51■□□□□ 0.87
FOXA1P55317 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
FOXA1P55317 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
FOXA1P55317 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
FOXA1P55317 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
FOXA1P55317 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.51■□□□□ 0.87
FOXA1P55317 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
FOXA1P55317 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
FOXA1P55317 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
FOXA1P55317 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.51■□□□□ 0.87
FOXA1P55317 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.51■□□□□ 0.87
FOXA1P55317 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
FOXA1P55317 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
FOXA1P55317 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
FOXA1P55317 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
FOXA1P55317 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
FOXA1P55317 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.5■□□□□ 0.87
FOXA1P55317 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
FOXA1P55317 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.5■□□□□ 0.87
FOXA1P55317 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.5■□□□□ 0.87
FOXA1P55317 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
FOXA1P55317 AC024257.2-201ENST00000549699 147 ntBASIC20.5■□□□□ 0.87
FOXA1P55317 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.5■□□□□ 0.87
FOXA1P55317 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
FOXA1P55317 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
FOXA1P55317 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
FOXA1P55317 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.5■□□□□ 0.87
FOXA1P55317 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
FOXA1P55317 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
FOXA1P55317 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.5■□□□□ 0.87
FOXA1P55317 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
FOXA1P55317 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
FOXA1P55317 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
FOXA1P55317 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
FOXA1P55317 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
FOXA1P55317 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
FOXA1P55317 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
FOXA1P55317 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.49■□□□□ 0.87
FOXA1P55317 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
FOXA1P55317 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
FOXA1P55317 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
FOXA1P55317 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.49■□□□□ 0.87
FOXA1P55317 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
FOXA1P55317 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.49■□□□□ 0.87
FOXA1P55317 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
FOXA1P55317 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
FOXA1P55317 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.48■□□□□ 0.87
FOXA1P55317 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
FOXA1P55317 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
FOXA1P55317 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
FOXA1P55317 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
FOXA1P55317 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms