Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC17.16■□□□□ 0.34
CDX1P47902 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CDX1P47902 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC17.16■□□□□ 0.34
CDX1P47902 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CDX1P47902 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC17.16■□□□□ 0.34
CDX1P47902 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDX1P47902 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDX1P47902 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.16■□□□□ 0.34
CDX1P47902 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX1P47902 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CDX1P47902 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
CDX1P47902 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC17.16■□□□□ 0.34
CDX1P47902 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
CDX1P47902 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.16■□□□□ 0.34
CDX1P47902 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
CDX1P47902 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
CDX1P47902 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX1P47902 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.15■□□□□ 0.34
CDX1P47902 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX1P47902 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
CDX1P47902 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
CDX1P47902 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC17.15■□□□□ 0.34
CDX1P47902 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDX1P47902 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC17.15■□□□□ 0.34
CDX1P47902 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC17.15■□□□□ 0.34
CDX1P47902 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC17.15■□□□□ 0.34
CDX1P47902 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CDX1P47902 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX1P47902 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX1P47902 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
CDX1P47902 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CDX1P47902 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CDX1P47902 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX1P47902 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CDX1P47902 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX1P47902 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX1P47902 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
CDX1P47902 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
CDX1P47902 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
CDX1P47902 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDX1P47902 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
CDX1P47902 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDX1P47902 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC17.14■□□□□ 0.33
CDX1P47902 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
CDX1P47902 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDX1P47902 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
CDX1P47902 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDX1P47902 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
CDX1P47902 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC17.14■□□□□ 0.33
CDX1P47902 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC17.14■□□□□ 0.33
CDX1P47902 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
CDX1P47902 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDX1P47902 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
CDX1P47902 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
CDX1P47902 AL020996.1-203ENST00000536896 2307 ntBASIC17.14■□□□□ 0.33
CDX1P47902 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC17.14■□□□□ 0.33
CDX1P47902 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC17.14■□□□□ 0.33
CDX1P47902 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDX1P47902 H19-210ENST00000439725 1929 ntTSL 2 BASIC17.13■□□□□ 0.33
CDX1P47902 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CDX1P47902 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDX1P47902 AC092068.2-201ENST00000590491 1708 ntBASIC17.13■□□□□ 0.33
CDX1P47902 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX1P47902 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDX1P47902 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC17.13■□□□□ 0.33
CDX1P47902 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX1P47902 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CDX1P47902 AP005435.1-201ENST00000529293 1178 ntBASIC17.13■□□□□ 0.33
CDX1P47902 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDX1P47902 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC17.13■□□□□ 0.33
CDX1P47902 RHOF-204ENST00000537265 699 ntTSL 2 BASIC17.13■□□□□ 0.33
CDX1P47902 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX1P47902 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.13■□□□□ 0.33
CDX1P47902 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CDX1P47902 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX1P47902 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX1P47902 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CDX1P47902 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX1P47902 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX1P47902 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CDX1P47902 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CDX1P47902 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX1P47902 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX1P47902 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDX1P47902 STX4-202ENST00000394998 1498 ntTSL 2 BASIC17.12■□□□□ 0.33
CDX1P47902 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDX1P47902 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDX1P47902 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDX1P47902 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.12■□□□□ 0.33
CDX1P47902 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDX1P47902 IGHV3-19-201ENST00000521488 291 ntBASIC17.12■□□□□ 0.33
CDX1P47902 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDX1P47902 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC17.12■□□□□ 0.33
CDX1P47902 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDX1P47902 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CDX1P47902 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDX1P47902 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDX1P47902 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDX1P47902 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDX1P47902 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms