Protein–RNA interactions for Protein: P07949

RET, Proto-oncogene tyrosine-protein kinase receptor Ret, humanhuman

Predictions only

Length 1,114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETP07949 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RETP07949 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RETP07949 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RETP07949 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC21.42■■□□□ 1.02
RETP07949 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RETP07949 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
RETP07949 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.42■■□□□ 1.02
RETP07949 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC21.42■■□□□ 1.02
RETP07949 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC21.42■■□□□ 1.02
RETP07949 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
RETP07949 AC092118.2-201ENST00000613495 667 ntBASIC21.42■■□□□ 1.02
RETP07949 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
RETP07949 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RETP07949 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC21.41■■□□□ 1.02
RETP07949 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RETP07949 AL158047.1-201ENST00000445918 881 ntBASIC21.41■■□□□ 1.02
RETP07949 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.41■■□□□ 1.02
RETP07949 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RETP07949 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RETP07949 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
RETP07949 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
RETP07949 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
RETP07949 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RETP07949 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RETP07949 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RETP07949 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RETP07949 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
RETP07949 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC21.4■■□□□ 1.02
RETP07949 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.4■■□□□ 1.02
RETP07949 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
RETP07949 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RETP07949 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
RETP07949 AC142381.4-202ENST00000563973 229 ntBASIC21.4■■□□□ 1.02
RETP07949 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC21.4■■□□□ 1.02
RETP07949 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RETP07949 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC21.4■■□□□ 1.02
RETP07949 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC21.4■■□□□ 1.02
RETP07949 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RETP07949 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
RETP07949 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
RETP07949 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RETP07949 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RETP07949 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
RETP07949 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.39■■□□□ 1.02
RETP07949 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
RETP07949 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RETP07949 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.01
RETP07949 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC21.39■■□□□ 1.01
RETP07949 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.39■■□□□ 1.01
RETP07949 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.39■■□□□ 1.01
RETP07949 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC21.39■■□□□ 1.01
RETP07949 OR10C1-204ENST00000622521 1039 ntBASIC21.39■■□□□ 1.01
RETP07949 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RETP07949 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
RETP07949 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
RETP07949 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
RETP07949 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.39■■□□□ 1.01
RETP07949 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
RETP07949 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.39■■□□□ 1.01
RETP07949 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
RETP07949 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RETP07949 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RETP07949 EP400NL-214ENST00000641289 2402 ntBASIC21.38■■□□□ 1.01
RETP07949 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
RETP07949 C1orf229-201ENST00000623686 2258 ntBASIC21.38■■□□□ 1.01
RETP07949 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
RETP07949 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RETP07949 CYP2T1P-201ENST00000432607 1285 ntBASIC21.38■■□□□ 1.01
RETP07949 AC010141.2-201ENST00000452426 721 ntBASIC21.38■■□□□ 1.01
RETP07949 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.38■■□□□ 1.01
RETP07949 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC21.38■■□□□ 1.01
RETP07949 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.38■■□□□ 1.01
RETP07949 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.38■■□□□ 1.01
RETP07949 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
RETP07949 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RETP07949 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.38■■□□□ 1.01
RETP07949 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
RETP07949 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.38■■□□□ 1.01
RETP07949 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
RETP07949 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RETP07949 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
RETP07949 AC068338.2-201ENST00000563278 1430 ntBASIC21.38■■□□□ 1.01
RETP07949 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RETP07949 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.37■■□□□ 1.01
RETP07949 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
RETP07949 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
RETP07949 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RETP07949 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.37■■□□□ 1.01
RETP07949 BMP1-204ENST00000397814 836 ntTSL 4 BASIC21.37■■□□□ 1.01
RETP07949 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC21.37■■□□□ 1.01
RETP07949 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21.37■■□□□ 1.01
RETP07949 TERF1P5-201ENST00000477545 1207 ntBASIC21.37■■□□□ 1.01
RETP07949 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RETP07949 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RETP07949 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.37■■□□□ 1.01
RETP07949 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.37■■□□□ 1.01
RETP07949 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RETP07949 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RETP07949 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
RETP07949 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms