Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SMIM28A0A1B0GU29 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SMIM28A0A1B0GU29 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC22.87■■□□□ 1.25
SMIM28A0A1B0GU29 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SMIM28A0A1B0GU29 RARG-204ENST00000543726 1779 ntTSL 2 BASIC22.86■■□□□ 1.25
SMIM28A0A1B0GU29 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC22.86■■□□□ 1.25
SMIM28A0A1B0GU29 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
SMIM28A0A1B0GU29 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
SMIM28A0A1B0GU29 GXYLT1P5-201ENST00000614548 1189 ntBASIC22.86■■□□□ 1.25
SMIM28A0A1B0GU29 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC22.86■■□□□ 1.25
SMIM28A0A1B0GU29 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
SMIM28A0A1B0GU29 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC22.86■■□□□ 1.25
SMIM28A0A1B0GU29 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
SMIM28A0A1B0GU29 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
SMIM28A0A1B0GU29 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC22.85■■□□□ 1.25
SMIM28A0A1B0GU29 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
SMIM28A0A1B0GU29 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
SMIM28A0A1B0GU29 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC22.85■■□□□ 1.25
SMIM28A0A1B0GU29 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
SMIM28A0A1B0GU29 AC010542.4-201ENST00000563151 1910 ntBASIC22.85■■□□□ 1.25
SMIM28A0A1B0GU29 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
SMIM28A0A1B0GU29 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC22.85■■□□□ 1.25
SMIM28A0A1B0GU29 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
SMIM28A0A1B0GU29 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
SMIM28A0A1B0GU29 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC22.85■■□□□ 1.25
SMIM28A0A1B0GU29 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC22.85■■□□□ 1.25
SMIM28A0A1B0GU29 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC22.85■■□□□ 1.25
SMIM28A0A1B0GU29 MAZ-216ENST00000616501 991 ntTSL 5 BASIC22.85■■□□□ 1.25
SMIM28A0A1B0GU29 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
SMIM28A0A1B0GU29 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
SMIM28A0A1B0GU29 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
SMIM28A0A1B0GU29 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
SMIM28A0A1B0GU29 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
SMIM28A0A1B0GU29 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
SMIM28A0A1B0GU29 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC22.85■■□□□ 1.25
SMIM28A0A1B0GU29 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
SMIM28A0A1B0GU29 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
SMIM28A0A1B0GU29 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC22.84■■□□□ 1.25
SMIM28A0A1B0GU29 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC22.84■■□□□ 1.25
SMIM28A0A1B0GU29 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC22.84■■□□□ 1.25
SMIM28A0A1B0GU29 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC22.84■■□□□ 1.25
SMIM28A0A1B0GU29 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC22.84■■□□□ 1.25
SMIM28A0A1B0GU29 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC22.84■■□□□ 1.25
SMIM28A0A1B0GU29 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC22.84■■□□□ 1.25
SMIM28A0A1B0GU29 MAP2K4P1-201ENST00000438453 1195 ntBASIC22.84■■□□□ 1.25
SMIM28A0A1B0GU29 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC22.84■■□□□ 1.25
SMIM28A0A1B0GU29 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC22.84■■□□□ 1.25
SMIM28A0A1B0GU29 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC22.84■■□□□ 1.25
SMIM28A0A1B0GU29 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC22.84■■□□□ 1.25
SMIM28A0A1B0GU29 AC008175.2-201ENST00000612840 297 ntBASIC22.84■■□□□ 1.25
SMIM28A0A1B0GU29 AC010536.3-201ENST00000620306 533 ntBASIC22.84■■□□□ 1.25
SMIM28A0A1B0GU29 AC231657.2-201ENST00000624556 255 ntBASIC22.84■■□□□ 1.25
SMIM28A0A1B0GU29 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC22.84■■□□□ 1.25
SMIM28A0A1B0GU29 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC22.84■■□□□ 1.25
SMIM28A0A1B0GU29 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC22.84■■□□□ 1.25
SMIM28A0A1B0GU29 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC22.83■■□□□ 1.25
SMIM28A0A1B0GU29 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC22.83■■□□□ 1.25
SMIM28A0A1B0GU29 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
SMIM28A0A1B0GU29 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC22.83■■□□□ 1.25
SMIM28A0A1B0GU29 AC006970.2-201ENST00000450065 779 ntBASIC22.83■■□□□ 1.25
SMIM28A0A1B0GU29 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC22.83■■□□□ 1.25
SMIM28A0A1B0GU29 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC22.83■■□□□ 1.25
SMIM28A0A1B0GU29 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC22.83■■□□□ 1.25
SMIM28A0A1B0GU29 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
SMIM28A0A1B0GU29 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
SMIM28A0A1B0GU29 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
SMIM28A0A1B0GU29 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC22.83■■□□□ 1.24
SMIM28A0A1B0GU29 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC22.82■■□□□ 1.24
SMIM28A0A1B0GU29 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC22.82■■□□□ 1.24
SMIM28A0A1B0GU29 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC22.82■■□□□ 1.24
SMIM28A0A1B0GU29 POU5F1P4-201ENST00000413175 1085 ntBASIC22.82■■□□□ 1.24
SMIM28A0A1B0GU29 HLA-L-209ENST00000420110 1011 ntBASIC22.82■■□□□ 1.24
SMIM28A0A1B0GU29 AC007322.1-201ENST00000426983 750 ntBASIC22.82■■□□□ 1.24
SMIM28A0A1B0GU29 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC22.82■■□□□ 1.24
SMIM28A0A1B0GU29 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC22.82■■□□□ 1.24
SMIM28A0A1B0GU29 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC22.82■■□□□ 1.24
SMIM28A0A1B0GU29 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
SMIM28A0A1B0GU29 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
SMIM28A0A1B0GU29 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC22.82■■□□□ 1.24
SMIM28A0A1B0GU29 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
SMIM28A0A1B0GU29 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC22.81■■□□□ 1.24
SMIM28A0A1B0GU29 MIR663A-201ENST00000385250 93 ntBASIC22.81■■□□□ 1.24
SMIM28A0A1B0GU29 CNN2P6-201ENST00000439038 900 ntBASIC22.81■■□□□ 1.24
SMIM28A0A1B0GU29 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC22.81■■□□□ 1.24
SMIM28A0A1B0GU29 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC22.81■■□□□ 1.24
SMIM28A0A1B0GU29 PARP1-210ENST00000629232 477 ntTSL 5 BASIC22.81■■□□□ 1.24
SMIM28A0A1B0GU29 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC22.81■■□□□ 1.24
SMIM28A0A1B0GU29 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
SMIM28A0A1B0GU29 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
SMIM28A0A1B0GU29 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC22.8■■□□□ 1.24
SMIM28A0A1B0GU29 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC22.8■■□□□ 1.24
SMIM28A0A1B0GU29 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC22.8■■□□□ 1.24
SMIM28A0A1B0GU29 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC22.8■■□□□ 1.24
SMIM28A0A1B0GU29 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
SMIM28A0A1B0GU29 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
SMIM28A0A1B0GU29 UQCRFS1P1-201ENST00000435169 820 ntBASIC22.8■■□□□ 1.24
SMIM28A0A1B0GU29 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC22.8■■□□□ 1.24
SMIM28A0A1B0GU29 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC22.8■■□□□ 1.24
SMIM28A0A1B0GU29 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
SMIM28A0A1B0GU29 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms