Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV40A0A0B4J280 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC17.3■□□□□ 0.36
TRAV40A0A0B4J280 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV40A0A0B4J280 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV40A0A0B4J280 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV40A0A0B4J280 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV40A0A0B4J280 AC007322.1-201ENST00000426983 750 ntBASIC17.3■□□□□ 0.36
TRAV40A0A0B4J280 MAP2K4P1-201ENST00000438453 1195 ntBASIC17.3■□□□□ 0.36
TRAV40A0A0B4J280 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV40A0A0B4J280 DENND3-207ENST00000518347 850 ntTSL 2 BASIC17.3■□□□□ 0.36
TRAV40A0A0B4J280 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC17.3■□□□□ 0.36
TRAV40A0A0B4J280 KRT18P20-201ENST00000548986 1279 ntBASIC17.3■□□□□ 0.36
TRAV40A0A0B4J280 DUX4L16-201ENST00000555130 1264 ntBASIC17.3■□□□□ 0.36
TRAV40A0A0B4J280 AC053503.5-201ENST00000601508 636 ntBASIC17.3■□□□□ 0.36
TRAV40A0A0B4J280 TFG-210ENST00000620299 1289 ntTSL 5 BASIC17.3■□□□□ 0.36
TRAV40A0A0B4J280 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC17.3■□□□□ 0.36
TRAV40A0A0B4J280 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV40A0A0B4J280 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV40A0A0B4J280 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV40A0A0B4J280 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC17.29■□□□□ 0.36
TRAV40A0A0B4J280 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
TRAV40A0A0B4J280 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV40A0A0B4J280 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV40A0A0B4J280 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV40A0A0B4J280 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC17.29■□□□□ 0.36
TRAV40A0A0B4J280 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV40A0A0B4J280 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV40A0A0B4J280 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
TRAV40A0A0B4J280 NAA20-201ENST00000310450 920 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAV40A0A0B4J280 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC17.29■□□□□ 0.36
TRAV40A0A0B4J280 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
TRAV40A0A0B4J280 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV40A0A0B4J280 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV40A0A0B4J280 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC17.29■□□□□ 0.36
TRAV40A0A0B4J280 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV40A0A0B4J280 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV40A0A0B4J280 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
TRAV40A0A0B4J280 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV40A0A0B4J280 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC17.28■□□□□ 0.36
TRAV40A0A0B4J280 ME2-208ENST00000638937 2471 ntTSL 5 BASIC17.28■□□□□ 0.36
TRAV40A0A0B4J280 GPX1P1-201ENST00000388829 606 ntBASIC17.28■□□□□ 0.36
TRAV40A0A0B4J280 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC17.28■□□□□ 0.36
TRAV40A0A0B4J280 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC17.28■□□□□ 0.36
TRAV40A0A0B4J280 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC17.28■□□□□ 0.36
TRAV40A0A0B4J280 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC17.28■□□□□ 0.36
TRAV40A0A0B4J280 AC005181.1-201ENST00000604782 1256 ntBASIC17.28■□□□□ 0.36
TRAV40A0A0B4J280 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV40A0A0B4J280 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV40A0A0B4J280 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV40A0A0B4J280 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC17.28■□□□□ 0.36
TRAV40A0A0B4J280 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC17.27■□□□□ 0.36
TRAV40A0A0B4J280 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
TRAV40A0A0B4J280 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV40A0A0B4J280 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV40A0A0B4J280 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC17.27■□□□□ 0.36
TRAV40A0A0B4J280 NCF1B-203ENST00000435988 1254 ntBASIC17.27■□□□□ 0.36
TRAV40A0A0B4J280 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV40A0A0B4J280 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC17.27■□□□□ 0.36
TRAV40A0A0B4J280 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRAV40A0A0B4J280 AL050303.2-201ENST00000619798 666 ntBASIC17.27■□□□□ 0.36
TRAV40A0A0B4J280 AC010536.3-201ENST00000620306 533 ntBASIC17.27■□□□□ 0.36
TRAV40A0A0B4J280 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
TRAV40A0A0B4J280 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
TRAV40A0A0B4J280 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TRAV40A0A0B4J280 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC17.27■□□□□ 0.35
TRAV40A0A0B4J280 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV40A0A0B4J280 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TRAV40A0A0B4J280 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
TRAV40A0A0B4J280 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC17.26■□□□□ 0.35
TRAV40A0A0B4J280 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC17.26■□□□□ 0.35
TRAV40A0A0B4J280 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV40A0A0B4J280 AC008175.2-201ENST00000612840 297 ntBASIC17.26■□□□□ 0.35
TRAV40A0A0B4J280 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV40A0A0B4J280 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV40A0A0B4J280 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
TRAV40A0A0B4J280 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV40A0A0B4J280 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRAV40A0A0B4J280 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV40A0A0B4J280 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
TRAV40A0A0B4J280 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV40A0A0B4J280 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV40A0A0B4J280 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV40A0A0B4J280 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV40A0A0B4J280 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV40A0A0B4J280 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC17.25■□□□□ 0.35
TRAV40A0A0B4J280 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC17.25■□□□□ 0.35
TRAV40A0A0B4J280 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV40A0A0B4J280 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC17.25■□□□□ 0.35
TRAV40A0A0B4J280 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC17.25■□□□□ 0.35
TRAV40A0A0B4J280 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV40A0A0B4J280 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV40A0A0B4J280 BMP1-204ENST00000397814 836 ntTSL 4 BASIC17.25■□□□□ 0.35
TRAV40A0A0B4J280 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC17.25■□□□□ 0.35
TRAV40A0A0B4J280 AL121832.2-201ENST00000610979 668 ntBASIC17.25■□□□□ 0.35
TRAV40A0A0B4J280 AC120498.10-201ENST00000621827 505 ntBASIC17.25■□□□□ 0.35
TRAV40A0A0B4J280 AC080038.3-201ENST00000623346 1952 ntBASIC17.25■□□□□ 0.35
TRAV40A0A0B4J280 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
TRAV40A0A0B4J280 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV40A0A0B4J280 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV40A0A0B4J280 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms